Array 1 994840-995539 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032622.2 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000191 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 994840 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 994901 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 994962 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 995023 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 995085 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 995146 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 995207 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 995268 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 995329 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 995390 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 995451 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 995512 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1011662-1013156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032622.2 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000191 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1011662 29 100.0 32 ............................. GCGGATCTGTTTTGAGGTGTTCTTCAACTGTG 1011723 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 1011784 29 100.0 32 ............................. ACTATTCGGTCAAAACAGCCTCCATTCTCAGC 1011845 29 100.0 32 ............................. CCAGCGCAAGCGGGAAACAATCATCGGGCAAG 1011906 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 1011967 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 1012028 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 1012089 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 1012150 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 1012211 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 1012272 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 1012333 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 1012394 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 1012455 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 1012516 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 1012577 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 1012638 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 1012699 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 1012760 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 1012821 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 1012883 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 1012944 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1013005 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1013066 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 1013127 29 96.6 0 ............T................ | A [1013154] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //