Array 1 4234191-4239788 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012947.1 Xanthomonas oryzae pv. oryzae strain PXO83 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4234191 31 100.0 34 ............................... TGGCCCTGTGCAATGACCCATTGCCACTGGCATC 4234256 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 4234323 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 4234388 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 4234454 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 4234518 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 4234584 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 4234649 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 4234714 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 4234781 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 4234849 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 4234914 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 4234979 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 4235045 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 4235110 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 4235177 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 4235244 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 4235309 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 4235376 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 4235441 31 100.0 34 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGG 4235506 31 100.0 34 ............................... CCAGGTAGGTGCCAGTGGCCACAACTTGGAAGAT 4235571 31 100.0 34 ............................... TGGTTACAGATGATCATGGGCGATCAGGCCGACA 4235636 31 100.0 36 ............................... CGCAAACCAGATGGCAAGTGGCAGCGGGGCAGCAAC 4235703 31 100.0 33 ............................... ACTAGCAGCCAGTTTGGCAGGCTGCTTTGCAGC 4235767 31 100.0 34 ............................... AGGAAACGGTCGCCATTGGGCAAGCTGCGGCGCA 4235832 31 100.0 34 ............................... TTGGGAGCCTATTAATAACATCTAGGACAACCCG 4235897 31 100.0 33 ............................... CGTCAATTGTGGTGACAGTTGTTTGCAGGGCAC 4235961 31 100.0 34 ............................... TTGCAAAAAAGCAGCCAAGCCGCCGGGAGTTTGT 4236026 31 100.0 35 ............................... CCATTTACACCAAGGCCTGCCGGCGAGGTTGCATA 4236092 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 4236157 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 4236222 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 4236288 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 4236353 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 4236419 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 4236485 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 4236552 31 100.0 34 ............................... CCAGATGCTTGACATGCATGAGCAGGGTGTGTTA 4236617 31 96.8 35 T.............................. CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 4236683 31 100.0 34 ............................... CTTGAGGACTCGTCGGGCCGCCAGCTGTCTGTCC 4236748 31 96.8 34 ...T........................... TGCTGCATGCTTGCGTGCCAATGTAACCTGCACA 4236813 31 100.0 34 ............................... ACGGTGGCTGTTAGCTCCAGTACTGTGCTTGCAG 4236878 31 100.0 33 ............................... TGGCTGATCAGGCTGCTGGAGTAGATCCAGCTG 4236942 31 100.0 34 ............................... TGCATCGCCTCGGCGAGCGCGATGATGAGCGCGC 4237007 31 100.0 35 ............................... CCATTTACAGACAGACCTGAGGGCGAAGTGGCGTA 4237073 31 100.0 33 ............................... CCAAATCGGAGGTCTGCACTGGCATATGCTGAC 4237137 31 100.0 33 ............................... GTTAAGGAAGCTCATGCAGTTGCCCAGGCTCGT 4237201 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 4237268 31 100.0 34 ............................... ACCTTCCCCGCGATGCGGCCGATGCGCTGCAGGC 4237333 31 100.0 34 ............................... TATTTCGCACGAGATGCGTGCAGCACCTGCGATC 4237398 31 100.0 35 ............................... AGCTGCGTTGGTCCGACCACTCTGGTGCGAGGTTA 4237464 31 100.0 35 ............................... TCGGCGACGTGGAGCACAAGACCAGCAAGAGTGGC 4237530 31 100.0 33 ............................... CCATGCGGCGAGGTTTCCACGCTGACACTCCCG 4237594 31 100.0 34 ............................... AGCACTGTGTTAGGTGGTATTGGTGGCTCGGGAT 4237659 31 100.0 34 ............................... TTAGCCACGATGGCATAAATGTCACTTGGCAGAT 4237724 31 100.0 35 ............................... TGAGACTTGTCTCTGAGGCACCAGATATGCAGGTG 4237790 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 4237855 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 4237921 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 4237987 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 4238053 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 4238118 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 4238183 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 4238250 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 4238315 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 4238382 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 4238448 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 4238514 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 4238581 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 4238647 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 4238712 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 4238776 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 4238841 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 4238906 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 4238972 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 4239038 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 4239103 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4239168 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 4239234 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4239300 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 4239364 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4239431 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4239496 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4239561 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4239628 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4239693 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 4239758 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 86 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //