Array 1 2281-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVJ01000147.1 Xanthomonas translucens strain CR31 flattened_line_294, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2280 31 100.0 34 ............................... TAAGGGCTGGCCGCAGCACACTGGGGAGTACGAG 2215 31 100.0 34 ............................... GATATCGACACCAAGGGGCCGTGGTCTTCCTACC 2150 31 100.0 36 ............................... ATGCTGCTCGCGCTGCTTGCTCTCGGGCGTGATCAC 2083 31 100.0 34 ............................... CCGCGACGCTGACAATGTACCCCGGCCCCGATCC 2018 31 100.0 35 ............................... AATCTGCCGGACATGCGCGGCGAGTTTATCCGCGG 1952 31 100.0 34 ............................... GGGTCCGGGCGCGAGTTGATCGAATCGCTGGTGA 1887 31 100.0 33 ............................... ATCACTGAGGCGCCGACGAACCAGCGTGAAGGC 1823 31 100.0 37 ............................... AAACGATTGCCGTCAATGTGGTCGACCTCGCCCAGAG 1755 31 100.0 34 ............................... TCTGGATCCCATCCATGTTGCTGGCTGCCTGCGG 1690 31 100.0 34 ............................... ACCTGACCGTTCAGACGCCGCGGCATTGACGTAT 1625 31 100.0 35 ............................... CTAGCCTACGAAGCGGCACTGGCGAGTGGGGACGA 1559 31 100.0 36 ............................... CTATGCTCGGAGTCGGCTTACTGGCTCCCGCAGCTC 1492 31 100.0 35 ............................... AGCGAGTTAGAGCCGAAGCTCTTCCACGCGCTGTC 1426 31 100.0 34 ............................... ATCCTTGGCCCGAGTACCCAATCGCGTGCAATGG 1361 31 100.0 35 ............................... GTTGCTGGCCGCCTGATCTATGCGTATCTTCTCGA 1295 31 100.0 36 ............................... AACAACGCGCAAGATCGCGCGGCGCTACGTTTACAT 1228 31 100.0 35 ............................... CACCCACTCACGATCGGCAGCTATGCCATCGCCCT 1162 31 100.0 34 ............................... AACGTGGGCGAGGGACGCGCGGCGGCCGGCAAGG 1097 31 100.0 33 ............................... TTTCTCCGGGCAATGGTCACGCACTACGTTCAG 1033 31 100.0 37 ............................... GCTTCCACGTCGAGGGCGACCGCAAGGGGACGCGCAA 965 31 100.0 36 ............................... CGACCATGAGAGCATCAACCCCGTGCATGATCGCGT 898 31 100.0 36 ............................... TTGCTGTCGGCGGGGTTACTCCTCACCCGTAGCGCG 831 31 100.0 35 ............................... CCGACGAAGTATCTTGAGTCATACATGCTCAACGT 765 31 100.0 35 ............................... TGTCGTAAAGGCGGTGGTGTGGCTCGGCGAGTCTA 699 31 100.0 34 ............................... CGATATCCCTGGAAGGGCAATACTTGCCGGATGG 634 31 100.0 36 ............................... CACATATCACGCGCCGGGAGCGGCACGCTCTCAATG 567 31 100.0 34 ............................... GCTTCGAACCGCAGTAATACGGGGAAATGCCCGC 502 31 100.0 35 ............................... GCGATGACCGACCCATACGAACGCGCGCTGTTGGA 436 31 100.0 34 ............................... GTGAACGCGCCGACAACACGGTCCATCGCCGTGG 371 31 100.0 34 ............................... GCGACCACCCGGTATTCTGGCTTGATTTTCAGTC 306 31 100.0 35 ............................... ATGACTGCGGGTCCTTGTGGGTGCCGTAGCACTCG 240 31 100.0 35 ............................... AAGCCGCACTCGAAACGATCCTGGGCCCGACGGGC 174 31 100.0 36 ............................... CCAGCGCCGAGTCCGGAGATCGAGGAACGCGATCTG 107 31 100.0 36 ............................... CTGGCCCTGATCGCGCAACGCCAGCCGAAGGAGAGC 40 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 35 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : CTTTTTGTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [10.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 57188-52875 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVJ01000018.1 Xanthomonas translucens strain CR31 flattened_line_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 57187 31 100.0 33 ............................... ATGGCTGCACCTCACACCGCATAGTAAACCAAA 57123 31 100.0 36 ............................... TGTGATCTGCCAAGTGCGCCAGTTAAGGTGCCGGCC 57056 31 100.0 33 ............................... TTTTACAAATTGAGCGGATCTGTAGGCCATATG 56992 31 100.0 37 ............................... CTAACGAGCGCGTCATGGCAAAAGTTCGGCTAGTGGA 56924 31 100.0 34 ............................... GATATTGAGGGGCCGGGGGTATACACCGTCACGG 56859 31 100.0 33 ............................... CCACAAACTACTCGATGTACTCGGACAATGCAG 56795 31 100.0 34 ............................... ACCTTCTGGACCCGGGCCAGCACGTTGTGCCGGC 56730 31 100.0 34 ............................... TGGTGCAGACGCGCAACCCGCCAGTGTGCCCCGC 56665 31 100.0 34 ............................... CTCGGCCGCCGGCCCGTCTTGCGTTGGCCTTGGT 56600 31 100.0 35 ............................... AAGAACGCCAAGACGCTGACGATTCCGCTGTACTT 56534 31 100.0 36 ............................... ATCGCGGGTCATGTTGCAATTATTGACCATGCTTTG 56467 31 100.0 36 ............................... CGCCGCTGCTTTCATCAATCCGCTCACCGTGGGCGC 56400 31 100.0 35 ............................... AGCATGTGCTGGCCGGGAGACCGCAGACCTTCCGC 56334 31 100.0 35 ............................... GTGGTATGCGGCCCCGCCCAGCTCCGCGAGCAGCA 56268 31 100.0 36 ............................... TGGGAAGTGAATCCGAACACGCGCCGAGACTCCAGG 56201 31 100.0 36 ............................... ATGGGCGAAATCAAGCACACCGAGGACGGCAAGTAT 56134 31 100.0 36 ............................... ACCATCGAGGCCGAGTTTAACGGCATGTACGTGGAC 56067 31 100.0 36 ............................... ACGTTCAAGTGGACGAGTAGGTTCCACAAGTCGGCG 56000 31 100.0 34 ............................... TTGTCCATCGCGCAGGCGCGCTTAATGACCACGC 55935 31 100.0 34 ............................... TCCTGTTCGAAACTGGGGGTGTGGTTGCCGATGA 55870 31 100.0 34 ............................... TACTACTGCCGGGCCGAGGCACTGGTGGCGGCGA 55805 31 100.0 36 ............................... CGGTACGGGCGAACGTCAGGGCAATGCCGTTGCCGG 55738 31 100.0 34 ............................... AAGTGTGCATCGCCGTGGCCCCTCTTGCGAAGGG 55673 31 100.0 33 ............................... AAAGGGGAGTCAGGTTAAGCACTTCGCGCAGCT 55609 31 100.0 37 ............................... GATTCCCATCTCTTACAGTGTGAGAGAGAACCGGAGC 55541 31 100.0 34 ............................... GATAACTCGAGTCGATTCCGAGATGCGCATGATC 55476 31 100.0 35 ............................... TGAACACGGTCGCTGAAGAACTCGCCACCAGAGAG 55410 31 100.0 36 ............................... CTCATGGCAGGCCTACAGTCCTGGCAGCGCGGGACG 55343 31 100.0 34 ............................... ATTCAACACCTGCATCACCAGCCCGCCCTACTAC 55278 31 100.0 34 ............................... AGGTTTCCGCCGTAGCGAGGGGCCGTCTCGTCGA 55213 31 100.0 35 ............................... CGCCTGCCCTTTGCCAGATTTGGCGGCGTCCAGCA 55147 31 100.0 33 ............................... CAACCCGAGCGGATCTGTAGGCCATATGCGCGA 55083 31 100.0 35 ............................... GTGCGTACTTGGCCGACCGCCGGGCTACGCGCGCG 55017 31 100.0 35 ............................... TTCCGCATGCCGTCCTCTCCGAAATGCTGCGTGAG 54951 31 100.0 34 ............................... CACTTCGCGTGCTCTGGGTGTTTGTCGTCTTTGG 54886 31 100.0 37 ............................... CCTCCCAACTGTGCCGGGCCAGGGCCACCATCGCCGC 54818 31 100.0 35 ............................... CGAATACGGCGCCTGAGGTAATCCCGGTTGTGTCT 54752 31 100.0 36 ............................... CTGGGGGGTTTTGGGCGCTGGGGGTCCGCGTTGAGA 54685 31 100.0 35 ............................... ATGGGCGAAATCAAGCACAGCGCCGATGGCAAGTA 54619 31 100.0 36 ............................... GTCTCCCGCTTCGTAGAGGAGGGTGTGCGCGGCAAG 54552 31 100.0 35 ............................... CAAAATTTCATTACGATGGACGACATCGTCACCGA 54486 31 100.0 37 ............................... ACCTGCTTGCGGCGCAGTTCGGCGGCCTGCAGGTCCA 54418 31 100.0 36 ............................... ACGGCCCTGGCCGAGCGGCAGAAGCTGTTGCTGGCG 54351 31 100.0 35 ............................... AAGCGCGACAGCAGCAAGGCCGGGAACCTGCAGCT 54285 31 100.0 35 ............................... CGCAGTCTCTGGCCGGAGATTGAGCTGAACCGCTC 54219 31 96.8 35 .....................T......... TGTACAAGGCGCACAGGCTAGCATGGCTCCATGTC 54153 31 100.0 34 ............................... TCGGATGTGGCAAGAGCGGCGTCGTCCAGATCCG 54088 31 100.0 36 ............................... CGGGACGCGGCGCTGGGTGTCGTGGACGCCGCGCGC 54021 31 100.0 33 ............................... ACAGACCTGGCCCAGCGGCAGAAGCTGTTGCTG 53957 31 100.0 33 ............................... ACGGTGATCCGATGCTGGGCGATGTCTGGGATG 53893 31 100.0 35 ............................... CAGTTTCCCCCCGCCGTTGGACGCGGGCGAGGGTC 53827 31 100.0 34 ............................... GGTGATCATCCTCGACGAGTGCTACACCGTTTTC 53762 31 100.0 34 ............................... TCCGTTGGGCCAGGTAGTGATGCACAGCCAGAGT 53697 31 100.0 35 ............................... GTGATGTGTCTATCGCCCCAGCCTGGATGATTCTC 53631 31 100.0 34 ............................... TCGATGCCGGCGGCCTGGCAAATCTCAGTCGCCC 53566 31 100.0 35 ............................... ACGACAGAAGCAATCACAGTTACTGCAATACTGAA 53500 31 100.0 35 ............................... CTGGCCAACCTGGTGGTGCTGGTCTTCACTTCCAG 53434 31 100.0 35 ............................... TCGGTATAGCGGTGCTTGAGGTAAAGCAGGCAAAG 53368 31 100.0 36 ............................... CGTTACCAGCGCAGCGCCATCCTGATCGACGAAACG 53301 31 100.0 34 ............................... TCCAAGTCGGGATGGTCCGCGGCGCCGGCGCGGC C [53289] 53235 31 100.0 36 ............................... ATGGCTCAGTCTCGCTGGCGGGTGGCCGGTGTGGCC 53168 31 100.0 35 ............................... ATCACGTACTAGCAGCCCGAGCATCCCCAATGAGG 53102 31 100.0 35 ............................... ATATGCCCGGTAGCGGCCGTCTTCTCCCATACCCA 53036 31 100.0 33 ............................... CCGTACTACGTCACCGGCAACTTCGAGGGTGGT 52972 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 52906 31 87.1 0 ......CG.......C.........C..... | G [52879] ========== ====== ====== ====== =============================== ===================================== ================== 66 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //