Array 1 1172606-1172089 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVJ01000001.1 Chromobacterium vaccinii strain NCTC9370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1172605 29 100.0 32 ............................. GGGCTGCGGTGAGCCTGAATCTGATTAATCAG 1172544 29 100.0 32 ............................. TTCTTGACCATGGCCAGCAGCATGTCGCGGGT 1172483 29 100.0 32 ............................. CCAACATCCCCCGGCCTTGCCGTGGAGGGTCT 1172422 29 100.0 32 ............................. TCATGGCCCGTCACCGCGCCTGTGCTGTATCC 1172361 29 100.0 32 ............................. GCCGGTATCGTGCTGCTGGAAATCGCGCCGCG 1172300 29 100.0 32 ............................. ACCGATTGGGTGTACGACAAGCTGGCCATCCC 1172239 29 100.0 32 ............................. CCATCTGGAAGGCCACCGGCATCCGGCCGGCT 1172178 29 100.0 32 ............................. CTAGTTGAACCAGCCCACGCCGCCGGCCAGGT 1172117 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACGATGCTGGACGCCGGCGGTTTGGACAAACCGGAGGAGCAGGGCGTGGTGGGCGCGGCGTTTCCGGAAGACGAGGGACTGGGCGATGCTGGTCATCGTGCTTGAGAACGCGCCGCCCCGGCTGCGTGGCCGGATGGCGATCTGGCTGCTTGAAATCCGCGCCGGCGTTTACGTGGGCAACTACAACCGCAAGATCCGCGACTACCTGTGGCAGCAGGTGGAGGAGGGGTTGGAAGACGGCAACGCGGTGATGGCTTGGCAAGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTTGGGGCCAACCGCCGCATGCCGGCCGAGTTCGACGGCGCGAAGTTGGTGTCTTTTCTGCCGCCTCCGGTACCGGAAGAGACCCGTGAATAGCATGTGGATCGCTTTGCTTCAGGGGGCGATTTGGCTCTTCGAAAATCGGTAGATTTTTAGGTGGTGTTTTTATTTTGCAAAATCAATTGCTTGCGATTGGT # Right flank : TGATGGGATGGGGTTGGGATTGCTTGAAAGAGCTATTTCCACTCCCGCAGGGATGCGCTGTTATCTTGCAATCCGTCTATGTCTTTCACGCGGGAAGCCGTTTGCCATTCAATTCCGTTCCCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAAGCTAGAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCGTTGTTTCCAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTTTGGCTGGGCAGCGGGGTGACTTTTTCCGCGCTGCTGATCTCTCCCCGCTGGCGCTGGCCGGCCATTCTTGCCGGCGTGTGGCTGGCGTCGATGATCTGGGGCATGGCGGCGCATGGCCTGAATCCGGTGGGCGCGGCGGCTTTCGCCAGCATCGAGGCGGTCAGCGGCGCCATGGGCTGCTGGGTGGCCAGCCTGGGGCGCAACGATCCGGACACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1184281-1183212 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVJ01000001.1 Chromobacterium vaccinii strain NCTC9370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1184280 29 100.0 32 ............................. GCATTGTAATCGGTGTTTCCCCCACCACAGGG 1184219 29 100.0 32 ............................. CCATGGTTGTCTCCGAGAGGTCGGGACAACCA 1184158 29 100.0 32 ............................. GAGACCCTACGAGTCAATGGACCGGCGGTTGC 1184097 29 100.0 32 ............................. GGTTGAAATCAATACAAGTAATGAATTTGCAA 1184036 29 100.0 32 ............................. CAGACTGTTAATTGCTGAATCATGAACGGACA 1183975 29 100.0 32 ............................. TTAATTTTTGCCCTTTCCGCTTGATACATGAC 1183914 29 100.0 32 ............................. ATTCTATCAGGAAAAATTTATGCGACTGACAC 1183853 29 100.0 32 ............................. GCGGCCTAACCATGAACTTCGCGCCCAATCTG 1183792 29 100.0 32 ............................. CCGCGCACATTTCCGCATCTGGCCGGCTGCAT 1183731 29 100.0 32 ............................. TATGATGTTATTGTGTGCCGAGCATTACCGTC 1183670 29 100.0 32 ............................. TGCTGGTCCAGGATTCGCTGGAGTTGTTGGCG 1183609 29 100.0 32 ............................. CTGACAGCACACATAAAAACGCCGGCGCACCG 1183548 29 100.0 32 ............................. CAGCCGCCGAATTTTCTGGAGCGCAGCGAGCA 1183487 29 100.0 32 ............................. CGCCAGCGCGAGGTGCTGTCTGGGCTCAGCGC 1183426 29 100.0 32 ............................. GAGTAGGCGGCGGGCGCACTCGACAATGTGTG 1183365 29 100.0 32 ............................. ACGCGCTCTACGCCCAGGGCCGCACCAAGCCC 1183304 29 96.6 32 ...............A............. TGTTCCGGCAACTGTTGGGCCATCTCCAAATA 1183243 29 82.8 0 .C.........A..C....T...C..... | TT,C [1183216,1183219] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 GTGTTCCCCACGTGTGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGTCTGCCGCAGCTGCAATGCGCCGACCGTGTCTTCCGTCCGCTGCACGAGCGGCTGGCCACTCAGGCGCTGACCGGTTTCGAGTGGCTCAATCCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGCCTCACCGCCAACTTCGCGGCGGAACCTGCCGTCTATGGCAAGCAAACCTTGCCGCCTCAAAGCTTGCTCGCCGAGCTGGCAGGCCAGCCGCCCAGGCTGCTGCGGGTGGCCGATTGCGCGGGCAAGTGAGTCGCTGGAATAATGCCGATGTCGTTTTGCTGGCCATGGCACGGTAGTCTTCCATGGCTGGCAGGCGGTATTGCCGGGTGATTCAGCTGATTATTTTTTGGGCGGGAAAATCGGTAGATTTTTAGAGTGAGTTTTTATCTTTAAAAATCAAAATGTTGAGATTGGT # Right flank : CTATATCAGTCGTTCAAGAGTTCTCCATGCCGGCAGGGATGCGTTCCAAACTGCCTGCCATGCCGATCGGCGGGTGATTCACATCCGATCGCCGGTTTCGTTCAAGTGGAAATGATGATGCTTTCCGCCCATGCAGAACGAAAGGACTGGCTATGCCCTGGATGACCGACTTGTTCAGTACCGCCAATGACGCCAGAGGTCCGTTTCCTGATCGCCCCTTGTCGCGCGTCACGCTGCCCGGGACGCACGACTCTGGCTGTTATGTGGACCGGGCGGTGAGCAACGCGCTTTCCAAAACCCAAAGCCAGGACATCTACGGCCAGCTGTTGGGCGGCATCCGGTATTTCGATATCCGGCCATGCGTCAAGGATGGGCGGTTGTTCACCTATCACGGCGAGTTTTATACCGGCGGGCCGATAGATGGCGAGGATGGCATTCTGATGCAGCTTCGCCGATTCATGCTGGAGCTGGAGACGGCCCATCGGGAACTGGTCATTCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1192957-1191587 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVJ01000001.1 Chromobacterium vaccinii strain NCTC9370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1192956 29 100.0 32 ............................. GCAGATAGGCCTGATCTGATTGAAAACTGGTT 1192895 29 100.0 32 ............................. AACCCACTCGGACTGTATTGCACTCACTTCGG 1192834 29 100.0 32 ............................. CCGCAAATCCGCATTACCGGCGTCCACAAGGG 1192773 29 100.0 32 ............................. CCCCCCACGTCAGTCACCTGGACCCGGTTCGC 1192712 29 96.6 32 ........T.................... TGCGCGCCGAACTGGCGCCCTTGGCGCATGCC 1192651 29 100.0 32 ............................. ACCCGCGCTTTGCCCGGCCGAACGTGTACGGC 1192590 29 100.0 33 ............................. TGGCCGACATCTGCCGCCAGCACAATGTCGCGG 1192528 29 100.0 32 ............................. GGCATGTACGCGCTGCGCGGCACCGGCGCGCA 1192467 29 100.0 32 ............................. AGGGGTTGGTAGATTTATGCACTTCATTTTCA 1192406 29 100.0 32 ............................. TATCGGGGGACTGAAGTACAAGTGAGCACATC 1192345 29 100.0 31 ............................. GGCGCAAAATCGTGCTGAGTATGGTCAAGAG 1192285 29 100.0 32 ............................. TAAACGTTGGTACGGCATCTATCGGTTTGAGT 1192224 29 100.0 32 ............................. TCGCTCGTCAGGAGGGCGGAGTTATTCGGTTT 1192163 29 100.0 32 ............................. TGGCCGGCGGCCAGAGTGTTGGAGGCCAGGCG 1192102 29 100.0 32 ............................. CACGAAGTACATGGACTGGAAGCAGTGATCGG 1192041 29 96.6 32 ............................A GGATCGAACCTACAACCGCCTGGTTAACAGCC 1191980 29 100.0 32 ............................. CCCAGCAGGCACAATTGCTGGGCTTACAGACT 1191919 29 100.0 32 ............................. ATCGGCGGCACGGTGGATGTTGTGATCCACGC 1191858 29 100.0 32 ............................. CACGGCCGCGCCAGTGAAAACGCAGTGATCGA 1191797 29 100.0 32 ............................. TCTGCCCGCAGGGTGGCCACCCCATAACAGAA 1191736 29 100.0 31 ............................. CCGCCAGCGTTGCCGGGGATGATGCCCAGCA 1191676 29 100.0 32 ............................. TTGTTCCGCGAGACCTACCACGAGATTCCAGA 1191615 29 79.3 0 ...................A..C..TTTT | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TCTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTAAGCGGCTTGCCCGGACCGATCAGATGCTGCTGGCCGATCACCTGATCGAGCGCCTGCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCGGAGAAACAGTATACCAGTTGGGGACCGGCATGAAAAAAGCGCCAGCCAGGCGCTTTTTGATTGCATGTCATTGGAATTTCGTTAGTCTATGGCGTCTGGCCGAGCCAAAGCCGGGCTGTTGAGAGGCCTTGCGCCCAGGCTCTGAGGCTAGCGCGCGGCCCGCTTGGAGAGGGACAATTTCCCAAGGCCGCGCGGTGGTTTGCAGGGGGATTTGAACGGCGTTTTATGGCCGGAAAAATCGGTAGAATTTCAGAGTGGATTTTTATCTTTAAAAATCAGCAGTTTGAAAATGGT # Right flank : TCGATTAGCAGTTGGCGCATAGGGGAGCGTGGCCCATATCCGCTTCTGTCTGCCAGCCCCAAGCCCGAAAACAAAAAAGCGCCCCGTGGGGCGCTTTTCTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGTTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAATCCTTGCGATCCAGCACCACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //