Array 1 209862-210987 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOF01000033.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 87-0208 SEEH0208_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209862 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 209923 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 209984 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 210045 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 210106 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 210167 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 210228 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 210289 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 210350 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 210411 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 210472 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 210533 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 210594 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 210655 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 210716 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 210777 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 210838 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 210899 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 210960 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227245-228908 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOF01000033.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 87-0208 SEEH0208_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 227245 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 227306 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 227367 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 227428 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 227495 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 227556 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 227617 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 227678 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 227739 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 227800 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 227861 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 227922 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 227983 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 228044 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 228105 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 228166 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 228227 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 228288 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 228349 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 228452 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 228513 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 228574 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 228635 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 228696 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 228757 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 228818 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 228879 29 96.6 0 A............................ | A [228905] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //