Array 1 1838718-1840395 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWA01000079.1 Salmonella enterica subsp. enterica serovar Derby strain 201407219 201407219_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1838718 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1838779 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1838840 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1838901 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1838962 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1839023 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1839084 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1839145 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1839206 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1839267 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1839328 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1839389 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1839450 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1839512 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1839573 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1839634 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1839695 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1839756 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1839818 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1839879 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1839940 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1840002 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1840063 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1840124 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1840185 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1840246 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1840307 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1840368 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1856654-1858452 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKWA01000079.1 Salmonella enterica subsp. enterica serovar Derby strain 201407219 201407219_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1856654 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1856715 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1856776 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1856837 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1856898 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1856959 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1857020 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1857081 29 96.6 32 ..C.......................... AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1857142 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1857203 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1857264 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1857325 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1857386 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1857447 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1857508 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1857569 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1857630 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1857691 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1857752 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1857813 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1857874 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1857935 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1857996 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1858057 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1858118 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1858179 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1858240 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1858301 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1858362 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1858423 29 96.6 0 A............................ | A [1858449] ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //