Array 1 4106-3550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVW010000130.1 Synechocystis salina LEGE 00041 NODE_221_length_4124_cov_5.7318_(reversed), whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 4105 36 100.0 39 .................................... GGCCTCAGGACAGTATTCAACACTGTCAGACCACCACAG 4030 36 100.0 34 .................................... CGATTAATGCGTTTAACCGGGAGTTACATCCTTA 3960 36 100.0 43 .................................... TACTTTCTGGTCAGCATACTTTTCAGCACGCGCTATAGAAGTT 3881 36 100.0 38 .................................... ACATTATCTACTCTTTAGAGCGGTAGCATCTCCATGTT 3807 36 100.0 36 .................................... TCTTGTCCATGGTAATCAGGGTAACTGACATCTTTG 3735 36 100.0 41 .................................... CAACGTAACTAACACAGCCTTCCATGAAAAACCCCTGGCGG 3658 36 100.0 37 .................................... TCGATAGCCCACCGCGCGAGGCAGTCGACTACCATTT 3585 36 97.2 0 T................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 99.7 38 CTCTCCATTCCTAGGAGAAACTAATTGATTGGAAAC # Left flank : TACACTGGTTTGTTGCTT # Right flank : TCAGTAAGTTTCATGGAAAGTAATTGCTTAAAGTTAGGCGATGATTACTTGTAAAACCGTTAAGACCTGTTCAATCAATGGTGTTGGCATGATTTCCCCCGTGCTGATCCACCAGCGTTGGCTCAGGTCTAAAGTGCGAATTTGTTCAGCAATTATTGAGCCCGTTATCTTGTAGCCTGCGGGGATGGGGAGCAAAGTTTTTACTTCTGGTTTAATGGTGCCAGTAATGGGGGAAACAATTACAATCCCGTTCCTGGCCTGATTAAAAGCGGTATGACTAAGCACCAAACAGGGGCGAGCCTCTCCCATTTGTTCTCTTCCTTGGGTTGGATTAAGCTGAACCCGAATGACTTCCCCCCGTTGGGGATAAATCAGTTCTGTCATATCATTTCTTGGCCCGTCATCGGACTATCAACAAAGTCCTGGGCATCTTCAGGATATTGAAAATCCGCGGGGATACTGGCTAGGAGTTGATCGAGTTCCAGGGGTGCTGTTTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCATTCCTAGGAGAAACTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 15637-23107 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEVW010000063.1 Synechocystis salina LEGE 00041 NODE_119_length_23125_cov_4.05831_(reversed), whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================== ================== 15637 36 91.7 37 .......C..G..............A.......... TATTCTTGGTATAACCTGAGGCAAAGCTGAAAGCCTT 15710 36 91.7 37 .......C..G..............A.......... AAACTCATCGTACAACCACTGAGTGGCTACCTCGGGG 15783 36 91.7 41 .......C..G..............A.......... TTACATAGGCTTCATCTGCCCAGTCCATCAGACTACAGATG 15860 36 91.7 37 .......C..G..............A.......... TTACCTAGTGCGCCAAATAATTGAAGCGTTCGGGGGA 15933 36 91.7 36 .......C..G..............A.......... TGGCGGGGAAAGCGTCTTGGGTATCAGGCCCAGTAG 16005 36 91.7 36 .......C..G..............A.......... TGGCGGGGAAAGCGTCTTGGGTATCAGGCCCAGTAG 16077 36 91.7 35 .......C..G..............A.......... CGGTGAAGCTGTATGGGATATGGCAGAACGTTGTG 16148 36 91.7 38 .......C..G..............A.......... TCTCTACTATCTCTTCAATGCTTATTAGTCCTTTATTA 16222 36 91.7 36 .......C..G..............A.......... AGAGACAGGTTTAGAAGCGGGCTTTCTACATATAAT 16294 36 91.7 35 .......C..G..............A.......... GGATATTCCCCTTTCATTCCGAGGTCATAAATTTT 16365 36 91.7 43 .......C..G..............A.......... CCGTTGCCATTCCCGTTTGCTTTGTACTCTGTCTTTTCCTGGG 16444 36 91.7 36 .......C..G..............A.......... CAGAACAAAGCGAGCAGACAGACAGAAACGTTCCAA 16516 36 91.7 36 .......C..G..............A.......... TTGGCTACTCGGAACACCTGTGATAGCCCAAAGGAA 16588 36 91.7 38 .......C..G..............A.......... AAGCAGAGGCACCTGGTCGTACAACAGCTAAAACAGCA 16662 36 91.7 35 .......C..G..............A.......... CCATGACCTGCAAGACGACCACGGGTAAACCCAGT 16733 36 91.7 34 .......C..G..............A.......... GGAGAAAGGTGTCCACAATGGAGATAATTATGTT 16803 36 91.7 35 .......C..G..............A.......... CGGCACGGGCCGTAGGGGTACGTATATCCCTTGAC 16874 36 91.7 40 .......C..G..............A.......... CTACCGTGTTGTCGCTTTTTAAAATCAGCCATAGCCACGA 16950 36 91.7 35 .......C..G..............A.......... CGCGGTGGAGCCCTTCGGCACCGCCAATCGCTGCG 17021 36 91.7 39 .......C..G..............A.......... ACTAGCGCATTATGATTGCCTTTAATCTTAACAAAAGAG 17096 36 91.7 36 .......C..G..............A.......... TTCGTTGTATTCAACTCGAAAGTCTTCCCTAGGGAA 17168 36 91.7 35 .......C..G..............A.......... TTCCTGGCAAACGAATAACACATTCATGCTTTTTA 17239 36 91.7 40 .......C..G..............A.......... TCTGTCTGCGTACTCAGCGGATTGACGCTGTACCTTGCGG 17315 36 91.7 36 .......C..G..............A.......... TCGTTGAGGGGTAGTCCGGTGACATCCCTCAACTGG 17387 36 91.7 43 .......C..G..............A.......... AGAAAAAGGGCGTGAGGCGGATTCGGTCTTTACTGTGATGCTT 17466 36 91.7 37 .......C..G..............A.......... TTAGATCTTCAACAAGCCACTAATGCTTTAGCCGACA 17539 36 91.7 35 .......C..G..............A.......... TTTGCCTGCAAACATTACCGTTGCTACAACAGCAA 17610 36 91.7 38 .......C..G..............A.......... CCAATGCCTTATCGGCGGCGGATGTGAACACCACGGCG 17684 36 91.7 36 .......C..G..............A.......... AGTCCGGGTTTTCCTGGTGGGGGGAACTAACACGGG 17756 36 91.7 36 .......C..G..............A.......... TTGGCGATCGCCGCATCGGGAATCTCGTCAACGACT 17828 36 91.7 38 .......C..G..............A.......... CCTGCCAGTGCGATTGAGTACTATTTTCTTCGCTACAA 17902 36 91.7 38 .......C..G..............A.......... TACCATCTGCGTGGCTACCCACGCAGACTTCATCCCCC 17976 36 91.7 44 .......C..G..............A.......... TGTAATTAATCTATAATGTTATGTGGATAGAATTCCTGTAATCA 18056 36 91.7 36 .......C..G..............A.......... TATTTCGTCATAGACGATAGCTACAAAGTCCTCTAT 18128 36 91.7 49 .......C..G..............A.......... ACGAGCGGCACGGGCAGCCCGACGAGCAACCACTTGGTCAAACCACTCT 18213 36 91.7 34 .......C..G..............A.......... CCCCTAGGTGTCTAAGGGCGGTATAGTTCATGAA 18283 36 91.7 41 .......C..G..............A.......... GGTGCTGAACTTATGACCGGCTTTAACGGCGTAGAAGTTCT 18360 36 91.7 40 .......C..G..............A.......... CCGAAGACAAGCAGCCTTATCCTGCAGAGAAACTATATTT 18436 36 91.7 39 .......C..G..............A.......... ATCGTTTCACACAATCACCTGCATCCCTTCTGCTTAAAG 18511 36 91.7 37 .......C..G..............A.......... TTAAGGAAATATTAATAACCTCCTCAAAATCATCTTC 18584 36 91.7 39 .......C..G..............A.......... ACCGTTGGACAGTTGGAATGTTGGTAATGTTACTAATAT 18659 36 91.7 39 .......C..G..............A.......... CATTACCTGTTCCGTGCGTAGAGGAAAAGCATGACGCTG 18734 36 91.7 56 .......C..G..............A.......... AACAAAACAGGAAAAATGAACAAAAAAAAAGACCCTCTGGGGGTCTTGTTGGGGGA 18826 36 91.7 36 .......C..G..............A.......... CCGACCCGACCTGACCCGGGTCCTGGCCCAGGCCCA 18898 36 91.7 38 .......C..G..............A.......... TTGATTAAATGCGACATCAGCTAACATTGCTCCATTAA 18972 36 91.7 35 .......C..G..............A.......... ACCTGAGGAAGGGAGGTTGATTGCTCCAGGTATTA 19043 36 91.7 44 .......C..G..............A.......... AAATACTGCCGTGGCTGATCCGTTTAGACCCACTGAGATAACGT 19123 36 94.4 37 .......C..G......................... TGACCTATATAGCCGCTACGTGCGGCAGGAGGCATGA 19196 36 100.0 38 .................................... ACTCATGGGAGTTGACCAAGGCTTGATTGAGACATTTG 19270 36 100.0 37 .................................... TTGGGGTGAGTGCCTATTCATCTGGGCAATAGGAGAA 19343 36 100.0 39 .................................... AGGAAGCTGGTCGCAGCTATCAAACTGAACAGCCCCCTT 19418 36 100.0 37 .................................... GGCAGTGGTCTTCTTCTTGCTCATGTCTTGATCTCCT 19491 36 100.0 42 .................................... TTCCGACTGGCTAAAGGTTAACTCCCAGGCATACATGGCATA 19569 36 100.0 36 .................................... CTCGCGGAATATGTGGTCATTGACTACACTCAGCCT 19641 36 100.0 39 .................................... TGATCCGTATTCGGGATGCCAGGAAGCATAAGCTCCGCA 19716 36 100.0 38 .................................... GTGATGATGAAACCGTCACACCAATCACGGGTAGTAGT 19790 36 100.0 41 .................................... TTTGTCAGGGCCTGACCTAGACATTTGGGTATGTCTGTTGG 19867 36 100.0 42 .................................... CACCCGATCAATCAAGGTCCCCTACTAATACCTTGATACCGG 19945 36 100.0 34 .................................... CAAGAAGCCCGGTTGTCTTGATCCTTCCATTCCT 20015 36 100.0 36 .................................... CCATAACTAAGGCTAACAAGAATCACTTTTTTGCGA 20087 36 100.0 38 .................................... CTTGACAGCCCCGCATTTGCAACGACATTCCAAAAGTG 20161 36 100.0 39 .................................... CATTGATCGGTGTGGCCCATGCTGGGGAAGTATCAGGCT 20236 36 100.0 41 .................................... CCCATAGGTGACAAAATTTGCCACTAATTGTCCATTGCAAT 20313 36 100.0 45 .................................... TCATGGCCATTTATAGTTACCTTGGGGATTGTGACCCTTTGGGAA 20394 36 100.0 37 .................................... ATTTCTTCTTGACTAAGGATCTTTTCGTACCAAGTAA 20467 36 100.0 40 .................................... CCTACCTCGGCAAGGCCGGCGGTCATTTCGTTGTAGACGT 20543 36 100.0 36 .................................... CCCCTGGGCGGTTCCTTGACCGCTTGAATTAATCAT 20615 36 100.0 43 .................................... TTCCAGCATTCACACCGGACGAAGTTGGAATTGCTTTCGTTGA 20694 36 100.0 35 .................................... ACGGCAGGGAATCCACGTCCGACCATGATGTCGTC 20765 36 100.0 42 .................................... ACTCCCCAACCGGCATTCCATACAATACAAAAGGCAAAAAAA 20843 36 100.0 42 .................................... TGATCCGATACTTATTGACTTTGACTTCAGCGGCTTTTTGGG 20921 36 100.0 42 .................................... TGATCCGATACTTATTGACTTTGACTTCAGCGGCTTTTTGGG 20999 36 100.0 41 .................................... CGATTAGATTAGACATAATTCATCCTTGTTTAGTGTTAGTT 21076 36 100.0 41 .................................... CGATTAGATTAGACATAATTCATCCTTGTTTAGTGTTAGTT 21153 36 100.0 42 .................................... ATGCCCATCGGTCAGGGCTTCCACAGTCACATTTCATGGCGA 21231 36 100.0 42 .................................... ATGCCCATCGGTCAGGGCTTCCACAGTCACATTTCATGGCGA 21309 36 100.0 39 .................................... TACCGACTATTTTAGGACACAAAAAAACCTACCCGGTTA 21384 36 100.0 35 .................................... TGGTGCAACGCCCCACGGGTAAGAACCCTTACTGT 21455 36 100.0 41 .................................... AAGTGTAAAGGGTAACACCCTGTAACCCGCCTGCTGTATGG 21532 36 100.0 41 .................................... GCGGAGGCTCACTGGAAGACTTAGCCCAGAAGTATGGACAC 21609 36 100.0 38 .................................... CAGGTGAACGATAGTATCCGTACCTTGGAGGGAGACTA 21683 36 100.0 40 .................................... AGGGTAAATGTAATCACAGTAAATCCATCACGTACGTCAA 21759 36 100.0 35 .................................... CCATTGCTTGAGAATGGGCAACGTTAACGCAGAAT 21830 36 100.0 34 .................................... GGCTACTGAGTACGACCCCTTCTAATTTAATTAA 21900 36 100.0 35 .................................... TTCTTCCGTGGGCGACACTTGTAACTACCCTTATT 21971 36 100.0 36 .................................... TTCTGTATATCGTATAACGATGACGCTTTCATCTTA 22043 36 100.0 37 .................................... GTCATAAATTGACCGGCAAGCAATTTTCAACCGCCCT 22116 36 100.0 37 .................................... CCCCAAGGTGATGGTCAAACGGCTGATGCGAACACTA 22189 36 100.0 37 .................................... AGGTTGTAAAGAAATTGGGGTGCCGTTATAAATCTGG 22262 36 100.0 42 .................................... TCGGGTGGAGGGATCTTTCAATAAGGAAACAATAGAATTTGA 22340 36 100.0 37 .................................... CCCAGTAGGGGCGACGGTTGGCGTTCTGTTCCTCGGC 22413 36 100.0 36 .................................... CTGCCGTAGGGCGAACTGTACTGGGCGACCCGCAAG 22485 36 100.0 42 .................................... TCGATCCAGATGTGGTCATTGACCACTTTGATCCGTTCGGGG 22563 36 100.0 37 .................................... AATGCCTAGCAGGGCCAGGCAGGTTCAAAGGATATGT 22636 36 100.0 41 .................................... CCTTTGTTTTGTTTCAGGATGAATACCAATTCAAGAGAGAG 22713 36 100.0 38 .................................... ATGTTGGGGATCGATGTTAATAGTTAAAGCGTCAACAA 22787 36 100.0 36 .................................... AAAACTATTTCGTGTTTCATGAAAATCAATCCTTTA 22859 36 100.0 32 .................................... CTCGCTCACCCGGTACACTGGTTTGTTGCTTA 22927 36 100.0 36 .................................... AAATAGCTGCCTGATTGGACAGAGTTAGGCGCGCGT 22999 36 100.0 37 .................................... AATGCCTAGCAGGGCCAGGCAGGTTCAAAGGATATGT 23072 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================== ================== 101 36 96.1 38 CTCTCCATTCCTAGGAGAAACTAATTGATTGGAAAC # Left flank : TTAATTCGCTAATTGATGTTTCTCTATGTTATTGCCTACGATATTCCTGATGATCGCCGTCGTAAAAAGATGGCCGATTTATTGGAGGGTTATGGCCAAAGGGTGCAATATTCTGTTTTTGAATGTACGTTGTCTAAGTCTAAGTTTAATGAATTGCAAAAACGTCTCCGCAAAATTTATCAATCGGAGGAGGATAGTTTACGCTTTTATCCTTTGTCTGGACATACCCTCACCCAGGTTGATATTTGGGGGGGACCACCGCTAACTAAGCCCCCCGGCTCGGTCATTGTTTAAAATCTATGCTAATTATTGGTGTACTATTATGAAGCTGGTGGAAAATCACTGTAATGCCCGTTTTTCGTTGGGAGCCTCGATGGTTTGCTGTATAAGGGTTTCAGCCGCTATTTTTGCGTTGAGCTTTTCCGATTATGGTCAATTTTTGCTGAGCCTCGCAGATGGTGGCTGGATACCTTGCTCCATAAGGGTTTAAAATGGGGTCA # Right flank : CCTTTGTTTTGTTTCAGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCATTCCTAGGAGAAACTAATTGATTGGAAAC # Alternate repeat : CTCTCCACTCGTAGGAGAAACTAATAGATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.30,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA //