Array 1 13443-6693 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKYP01000012.1 Acinetobacter junii strain TUM15570 sequence012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 13442 30 96.7 30 .............................C GCCCATAAGCACGATGTAAATGATAGTGCA 13382 30 93.3 30 ............................TG AATCTGTTTTAATTCTTGAGGGTCTGGAGA 13322 30 96.7 30 ............................G. TGCGCAAAGCTTGCATAACGGCAGCATGAG 13262 30 93.3 30 ............................TG CTCCACCTTTAGACCCTAGATACTCTAATC 13202 30 96.7 30 ............................G. TATGAATACATAGATGAACATTGGAGAAAG 13142 30 96.7 30 .............................C AAGAAGACAAACGAACAAATGACCGTTCTT 13082 30 96.7 30 .............................G CTAAGCCACCCCTAAAAGCTTTTGCTCTGT 13022 30 100.0 30 .............................. TCTTTCCTGCGACCACCGCTTTAACTTCCT 12962 30 96.7 30 .............................T TATGAAAGAGCGCAAGCACATCATGGATGA 12902 30 100.0 30 .............................. TCCCCACCGTACTTGCGAGCACGAGCAACC 12842 30 93.3 30 ............................TG CACTCTCCTGAGCACTGATCGCCGCAATCC 12782 30 96.7 30 ............................G. ACAGCGGTGATATAGGCGGCATCCTGCAGG 12722 30 96.7 30 .............................T CGGAAGAATCTCGCCCTAGTAAATTGTCCG 12662 30 96.7 30 .............................T ATTCAGGAACAATGATGCACTCGTCAGTAA 12602 30 96.7 30 .............................C ATGGGATGCTCACGACATAGAAAAAGCTAA 12542 30 96.7 30 ............................G. CATTTGGCATTCGTTTGGCTGCTCACTTTG 12482 30 93.3 30 ............................TT GCAGGTGATCGTAACGTGAACAATATACCT 12422 30 100.0 30 .............................. AAGGCATAAAGTTTAGCGACATGCCATCCT 12362 30 96.7 30 .............................C CCCCGAAGAAATCGCAGCAGGTCATCGTAT 12302 30 96.7 30 ............................T. AGAATGCTTTGGTATTCTTTTAGGGATTTT 12242 30 96.7 30 .............................T ATATGGAATTTAGTTTATCAAAGAAGTCTT 12182 30 96.7 30 .............................T GCCGACATCAATCCAACGGCTATAATCATC 12122 30 93.3 30 ............................GT GAAAACTAACTATCCTTATCTTCCATGATT 12062 30 100.0 30 .............................. TCTTAGAGCACATATTTGGATTTAATACGA 12002 30 96.7 30 ............................T. GTTCAGAAGCTTTTTGAGCAGTTGTAGCAA 11942 30 96.7 30 ............................T. AGCAGGCAGAGCAGAGGGGGGCATGGAGTT 11882 30 93.3 30 ............................TG AAAACAACGACTGGAGACAAACGCCCGACG 11822 30 96.7 30 .............................G TATTTCAATGCAAAGCAACGCTTAGAAATG 11762 30 93.3 30 ............................TT GCCACAATTCATTAAAATCATGCTCTATGC 11702 30 96.7 30 .............................C GAGCAAGAACTTTCGATACTTGGGAAGCGT 11642 30 96.7 30 .............................G TGATCACAGCGTCAGTTGTAAATTTCATGT 11582 30 100.0 30 .............................. CTGATGACATTACAGACACTACAATTTCTT 11522 30 96.7 30 ............................G. GCAGATAGAGCACGATGAATAATAAAAAAG 11462 30 100.0 30 .............................. TCAACTGTTCAACGGCAATTGATAGAGCGT 11402 30 100.0 30 .............................. CAAAAAAAAGCTGGTTCACAAGTAGCTACA 11342 30 100.0 30 .............................. TGCAGAATCAGAAACAGACCAACAAAAAAA 11282 30 96.7 30 .............................T CTGATAAAGAAACGTCGCCAAATGCGGTAT 11222 30 100.0 30 .............................. CCCTTTCGAGCCAAAGCGCAACCTGTGCCG 11162 30 93.3 30 ............................GT GCTCTCTCCACCCCACCGCAACTGCATCAG 11102 30 96.7 30 ............................G. TGTAGGTACGCCACCTTTTGAGCCGATAGC 11042 30 96.7 30 ............................G. CCAGTGAAACCATTACACCTGCAGGAGAGC 10982 30 93.3 30 ............................TG CCAATCCCTGCAGGAATGCACCTGCGCCAA 10922 30 93.3 30 ............................GC TTCCTGTGATCTCTAATGCTATTGGGTCAA 10862 30 96.7 30 .............................T CCAGCCATTTTTGACAGTCTGCTTGTGAAA 10802 30 96.7 30 .............................G TGTAGAGGTCAAAAGAATTGATCATTTGTG 10742 30 96.7 30 .............................T GACTATACAATCACGCTTAAACAAAGACAC 10682 30 96.7 30 ............................G. TACATTGGGAACTAGACTTTTCCGCTTGGT 10622 30 100.0 30 .............................. TAGTTAGAGTCCTACCCTTTCCATTGATAC 10562 30 96.7 30 ............................T. GTTTATTAAAGACAGCAGCAACAACAATTA 10502 30 93.3 30 ............................TT GAGTACCTTCATATTGTGTTAAGTAACACA 10442 30 96.7 30 .............................G TTAAGTAAGCTTGCTTCTTCCATTTTTAAC 10382 30 96.7 30 .............................C ATCGCCCAAACCACGTGCAAAAGCATAGCG 10322 30 96.7 30 .............................C CAAGACCAGCAAAGGCGTTTAGCACTCTTA 10262 30 96.7 30 .............................T ACATGCAGCGCTAAAAATAGTTTGAGGATC 10202 30 93.3 30 ............................TT TTCGCGCAAAGCTTCTTCGAGCAGTTCAAT 10142 30 93.3 30 ............................TG CATCTGGTGCCGTGGTAACGCTTGCATCGA 10082 30 93.3 30 ............................TG AACAGGCCAAAGCGCAAATTATGCAACTTG 10022 30 96.7 30 ............................G. TTGAAGCACGTGATTTGCCTAAACTAAAGG 9962 30 96.7 30 ............................G. GAGAGTATCCAAGCAAGGAACAAGAAAAAG 9902 30 100.0 30 .............................. TTGTTGCAGCAGCAGTAACAGCAAGACCCA 9842 30 96.7 30 ............................G. TGGTTCGCCGAATCATTGGAACGGATGGTG 9782 30 93.3 30 ............................CT GCCATGAAGTCAGCGCTTGTAAGTGTTGTA 9722 30 96.7 30 .............................C ATATCCAATCGGATCACCACTTGGCTTGAC 9662 30 96.7 30 .............................C TTGACGAAATTTGAATACATTTGAGTTTCG 9602 30 96.7 30 .............................G TACATATATAACTAAGAGAAGATTGAAAGG 9542 30 96.7 30 .............................T GACTTAGTTCGACTCAAACGCCCATATTTT 9482 30 100.0 30 .............................. CACCTAAAACATTAATTTGCGTTTGGAGAC 9422 30 93.3 30 ............................CT ACTTTGAAAAGCGGACTAATATGATTCTCA 9362 30 100.0 30 .............................. TGTCATATTTATATGTTTGCCACTCGCCCT 9302 30 93.3 30 ............................TG CTGCATCACTTCCAGTCACAGGCTTACAAA 9242 30 96.7 30 .............................C CAGTAAGAGCGACCACGCCACCACGTTGAG 9182 30 100.0 30 .............................. ACAGTTCAATTAGGTCAAGCATTTGAAATG 9122 30 93.3 30 ............................TC ATTAAGTCAGCATTTAACTACTATCTAAAA 9062 30 96.7 30 .............................T AGTTTCTTTTTTAAATCGCTTGACCCACCC 9002 30 96.7 30 .............................C TGTGTTTTGTAAGCTTACGAAAGCGAACCT 8942 30 96.7 30 .............................C GTGCTGAGTAGTTATATCGCAGAGCATCAA 8882 30 93.3 30 ............................TT CTCAAGTAAATATGCAAGGTATTGAGCAAG 8822 30 100.0 30 .............................. TCGTACTTGCTGACTTTAATTTTCACGGTA 8762 30 93.3 30 ............................TG CTGGTGACCGTTCAACCTTGATCACAAGCA 8702 30 96.7 30 .............................G TGATTGAAGTTTTCAAAGACTCATTGCTGC 8642 30 100.0 30 .............................. GTTGCAATGCTGGCATTAAGTTACCTTGAT 8582 30 100.0 30 .............................. TTACCTGAAAACTTTACAATCCAAGTAAAT 8522 30 96.7 30 .............................G CAGGTCAAATCATCCTTTCAGCTTTTGGTA 8462 30 96.7 30 .............................G CAGCGCCACCTCTAAGAACTTTTGCTACTT 8402 30 100.0 30 .............................. GGAGGACTTTTTTTGCAAAGTTAGATAAAA 8342 30 96.7 30 .............................T AAGAAAACGTCAGCATGACCACGACCGTAA 8282 30 96.7 30 ............................C. CACCCGAAGCTCTAAACGGGATCATGTTCC 8222 30 96.7 30 ............................G. TCTCAAAGAATCAGGTCAGATCGAACAAGA 8162 30 96.7 30 ............................G. TTAGTACAGATAGCGCTATGTCAGCACCCG 8102 30 96.7 30 ............................C. AGAGCAAAAAACTGGAAAATTAATTTTTAT 8042 30 96.7 30 ............................T. TCATTACTTAGATAAACTGGTATATGACAA 7982 30 96.7 30 .............................T AGACAGTGACGCTTTTACCCGTAATTTCCT 7922 30 93.3 30 ............................TG ATTTTCACCACACATATTTTCTTTAAAGTT 7862 30 96.7 30 ............................T. TTGCAAACGCATTGGGTAAAGGTGTTGAAG 7802 30 93.3 30 ............................TT TTACAAACCAACGCTCGACTTCACCCTTTT 7742 30 96.7 30 .............................G CCAATGCTTTGTGGTTTAAAGCTGTGCCTG 7682 30 96.7 30 .............................T AATAATCATTATTCGCAGGGAGGACCCCAT 7622 30 93.3 30 ............................TT ATGGTGATGCTAAGATTGACATCAATGGTA 7562 30 96.7 30 .............................C AAACAGACACTGAATTAGAGTTCAACGATC 7502 30 93.3 30 ............................GC CAACGGTTGCACCTAAGCCATATGTTGAAA 7442 30 96.7 30 ............................T. GCGAAGTTGAAGCATAAGCAGAGTTAAAAG 7382 30 96.7 30 ............................T. CGTGACACGCCCCACGCTACGCACACCGAC 7322 30 93.3 30 ............................TT GCCAAGAATCCAAACGGCAAAGTTATTCCA 7262 30 96.7 30 ............................T. TCGCACTGGGGCTAAACCGAATGTATCTTG 7202 30 96.7 30 ............................C. CAACGCATCTTGCATTCAAGCCAACCACTC 7142 30 96.7 30 ............................C. TTAAAAAACCCTCCGAAGAGGGTTATCAAT 7082 30 96.7 30 ............................T. TTTAAAACCAATTGTTATCTCTATGGCTTC 7022 30 93.3 30 ............................TC ATGCAGCTTAGTGAGCAGGAAGAGGATAGA 6962 30 93.3 30 ............................TT ACAGCGCAGGGATGTGCTGCGGGTATAGTA 6902 30 93.3 30 ............................TG TACATACTGGATCGAGTGGAACAGCAAATC 6842 30 96.7 30 .............................G CAATTCATGGTATGGGTTTTATTAGCGAAT 6782 30 93.3 30 .............C...............T AAAGCAATATTGACCAATAAAAGTAAGCGT 6722 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ============================== ================== 113 30 96.4 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GTAAATGGCTAGAACGATTCATTGATTATGTTCATATCATTCAACCGAGAGAAGTACCTCAAGCTAAAGTTACTGGTCATGCACACTATTATCGAGTCAATCCAAAGATGAGTGTTGAAGAGCGTATAGTTCATCAAGCGCAACGTCGAAATATTTCTTTGGATGAGGCTACGCAGCATTTTAAACAATATATTGAAAAACCTATTATTGAGCCTTATGTGAGTTTAAAAAGTCTGAGTGCAAAACGAGATCAAAATATAGATCGACCATATCGTTTATATATTGGTAAATCTCTAGTTGATGAGGCAAAAGATGGAGAGTTTGGAACGTATGGACTAAGTCGAATGGCAACAGTTCCAGAATTTTGACCCAATATTTTTTTACTATTTAACAGCTTAATAAAATCAATAAGTTACACCAAGTCGTTTTTTGATTGGGTAAATTGCTAAAAAACCATCATAAATACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : CATGTGATTTATTCATATGAGCCATTTAGAAATGTAACGGTCTTGATTGGCATTTGTTCTGTGTGTTCATTACGGAATTTATTTTAAGAATTAATAAGTGACTTATAATTCTTGTTCCAAAATTATCGTGTTATATGTCATTTAAAATACATAACATCAAGAAATATGATTCTTACTACATTCTAGATCTTTAATTTTTAAATAAGAAAATATACCCTGAAACCAACGTTTTTTTAGTGAAATTTTCATGCGCGGTTTATACCTCATCACCAATGATGATCCCATTCAACTTCTTTTAGAAAAGTTAGAGGCTGCACTAGCTACTGGTCATATAGCTATTTTGCAATATCGTCGAAAAAAAATAGAAAAAATAAATCAACCATCTGAAGTGGAGTTGATCAAAGTCCTTTGTGAAAAATATCAAGTCCCTTTTGTCATTAATGATGATTTGGCGTTAGCAGAACAATTTGGTTTAGGTGTGCATCTAGGGCAGTCCGATG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //