Array 1 100449-101758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINSP010000009.1 Escherichia coli strain S408-1 NODE_9_length_183849_cov_41.777653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100449 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 100510 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 100571 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 100632 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 100693 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 100754 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 100815 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 100876 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 100937 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 100998 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 101059 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 101120 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 101181 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 101242 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 101303 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 101364 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 101425 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 101486 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 101547 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 101608 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 101669 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 101730 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127458-128095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINSP010000009.1 Escherichia coli strain S408-1 NODE_9_length_183849_cov_41.777653, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127458 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 127519 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 127580 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 127641 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 127702 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 127763 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 127823 29 96.6 32 .........................C... TTGCAAACCGTGGCAAACGCAATTAACAAAAA 127884 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 127945 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 128006 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 128067 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //