Array 1 129428-127996 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCZM01000019.1 Escherichia coli strain EC_29 Scaffold_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129427 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 129366 29 96.6 32 ...........A................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 129305 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 129244 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 129183 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 129122 29 100.0 32 ............................. AGATCAACACGGTAGATATTTCCGTGATTGGG 129061 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 129000 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 128939 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 128878 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 128817 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 128756 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 128695 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 128634 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 128573 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 128512 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 128451 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 128390 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 128329 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 128268 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 128207 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 128146 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 128085 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 128024 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152225-151403 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCZM01000019.1 Escherichia coli strain EC_29 Scaffold_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152224 29 100.0 32 ............................. CTCTTCAGCAATGAAATCGTCAAACGAGATTA 152163 29 100.0 32 ............................. CACAATTATTCGGTACGACGGGTTCAGGCATT 152102 29 100.0 32 ............................. GACCAGAGATGTCGTAGCCGTATTTCGCAGCC 152041 29 100.0 32 ............................. TCACCGGGTCAGATACTGATGTTATGGCTTAT 151980 29 100.0 32 ............................. AGGAGTTTAATTTCCAGATTGAGCGCTGGATA 151919 29 100.0 32 ............................. GGCACAAAAAAACCCGCGCACGGCGGGTTAAT 151858 29 100.0 32 ............................. GTGAGTCCGTCAGCGGTGCGCCGCTGCAACAC 151797 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 151736 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 151675 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 151614 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 151553 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 151492 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 151431 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGATGGATAGCTCGATATCATGAGTTCCCCGCGCCAGCGGGGATAAACCGCGGCTTATTGCTCTTGCCGACGGATTACAGTGGAGTTCCCCGCGCCAGCGGGGATAAACCGTACATGTTGATGACGTTTGCCAAATGCCATGGGAGTTCCCCGCGCCAGCGGGGATAAACCGATTATTAATTCTGGTGGCGCTGGTCGCCCTGGGAGTTCCCCGCGCCAGCGGGGATAAACCGCCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGAT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 153008-152491 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCZM01000019.1 Escherichia coli strain EC_29 Scaffold_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 153007 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 152946 29 100.0 32 ............................. GGCGGCATTACTGCTGCGAGTATAACTACGAT 152885 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 152824 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 152763 29 100.0 32 ............................. GAAAAACAAATAGATGGATAGCTCGATATCAT 152702 29 100.0 32 ............................. CGGCTTATTGCTCTTGCCGACGGATTACAGTG 152641 29 100.0 32 ............................. TACATGTTGATGACGTTTGCCAAATGCCATGG 152580 29 100.0 32 ............................. ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG 152519 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATGAGTTCCCCGCGCCAGCGGGGATAAACCGCTCTTCAGCAATGAAATCGTCAAACGAGATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCACAATTATTCGGTACGACGGGTTCAGGCATTGAGTTCCCCGCGCCAGCGGGGATAAACCGGACCAGAGATGTCGTAGCCGTATTTCGCAGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGTCACCGGGTCAGATACTGATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //