Array 1 1-220 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEMFS010000499.1 Vibrio cholerae strain Vc2634 NODE_506_length_265_cov_1.260638, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence         	Spacer_Sequence                           	Insertion/Deletion
==========	======	======	======	========================	==========================================	==================
         1	    24	 100.0	    42	........................	CCTGACGTCTCAACCATTTGGGACAACGTAAAGGGTCGCGCC	
        67	    24	 100.0	    41	........................	ATGGTCACTTAAGCTCAAATGACATTAGCTCAAGTCGCGCC 	
       132	    24	 100.0	    41	........................	TAACCGCTGCAACATACGCAGCGACACGCCAGCGTCGCGCC 	
       197	    24	  95.8	     0	.......................C	|                                         	
==========	======	======	======	========================	==========================================	==================
         4	    24	  99.0	    42	TCCCGCAGGCGCGTGGATTGAAAT	                                          	       

# Left flank :   |
# Right flank :  TCTACGCTCACGATGATGCGGTAGACCAGCTCAGTCGCGCCTCCC

# Questionable array : NO	 Score: 8.81
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCCCGCAGGCGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.27   Confidence: HIGH] 

# Array family : NA
//


Array 1 233-5 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEMFS010000440.1 Vibrio cholerae strain Vc2634 NODE_442_length_281_cov_1.367647, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	===============================	===================================	==================
       232	    31	 100.0	    34	...............................	CATTACTTTCGGTTTGCGTGGTGAGGTCGCCGAA 	
       167	    31	 100.0	    35	...............................	TACTCTCTATTAAAAATAAAAGCGTCGCCACCGTG	
       101	    31	 100.0	    35	...............................	TTAGGTTTCCGATAAGCTCGCGCATTACCAGAAAA	
        35	    31	  87.1	     0	.............T.......G..GG.....	|                                  	
==========	======	======	======	===============================	===================================	==================
         4	    31	  96.8	    35	GTCGCGCCTCCCGCAGGCGCGTGGATTGAAA	                                   	       

# Left flank :   GCGCGTGGATTGAAACTTGTTTCGATAAAAGCTCAAGTCGATTATCGC
# Right flank :  ATTGA

# Questionable array : NO	 Score: 8.70
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCTCCCGCAGGCGCGTGGATTGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-7.20,-7.20] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [5.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.18   Confidence: HIGH] 

# Array family : NA
//