Array 1 214361-212257 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNA01000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain 199 NODE_2_length_655671_cov_25.2274, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 214360 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 214299 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 214238 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 214177 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 214116 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 214055 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 213994 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 213933 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 213872 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 213811 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTA 213750 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 213689 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 213628 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 213567 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 213506 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 213445 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 213384 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 213323 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 213262 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 213201 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 213140 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 213079 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 213018 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 212957 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 212896 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 212835 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 212774 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 212713 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 212652 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 212591 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 212530 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 212469 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 212408 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 212347 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 212286 29 96.6 0 ............T................ | A [212259] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232371-231123 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNA01000002.1 Salmonella enterica subsp. enterica serovar Montevideo strain 199 NODE_2_length_655671_cov_25.2274, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232370 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 232309 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 232248 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 232187 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 232126 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 232065 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 232004 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 231943 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 231882 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 231821 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 231760 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 231699 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 231638 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 231577 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 231516 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 231455 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 231394 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 231333 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 231272 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 231211 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 231150 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //