Array 1 2-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKP01000035.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain FSAN236CA SRR2088757.ctg000036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 63 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 124 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 185 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 246 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 307 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 368 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKP01000040.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain FSAN236CA SRR2088757.ctg000041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 62 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CCCCTTCTGATCCCCTTTCAATTTCGCGCTTAGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 430168-431416 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKP01000001.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain FSAN236CA SRR2088757.ctg000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 430168 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 430229 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 430290 29 100.0 32 ............................. CCCCTTCTGATCCTCTTTCAATTTCGCGCTTA 430351 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 430412 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 430473 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 430534 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 430595 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 430656 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 430717 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 430778 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 430839 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 430900 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 430961 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 431022 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 431084 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 431145 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 431206 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 431267 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 431328 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 431389 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446695-448128 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIKP01000001.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain FSAN236CA SRR2088757.ctg000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446695 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 446756 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 446817 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 446878 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 446939 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 447000 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 447061 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 447122 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 447183 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 447244 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 447305 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 447367 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 447428 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 447489 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 447550 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 447611 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 447672 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 447733 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 447794 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 447855 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 447916 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 447977 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 448038 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 448099 29 96.6 0 ............T................ | A [448126] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //