Array 1 58361-57721 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAB01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B4967 NODE_3_length_190854_cov_77.693222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58360 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 58299 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 58238 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 58177 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 58116 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 58055 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 57994 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57933 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57872 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57811 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57750 29 96.6 0 A............................ | A [57723] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76107-74493 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAB01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B4967 NODE_3_length_190854_cov_77.693222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76106 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 76045 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 75984 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 75923 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 75862 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 75801 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 75740 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 75679 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 75618 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 75557 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 75496 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 75435 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 75374 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 75313 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 75252 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 75191 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 75130 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 75069 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75008 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74947 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 74886 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 74825 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 74764 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 74703 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 74642 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 74581 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 74520 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //