Array 1 8819-7019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANPK010000030.1 Pseudomonas otitidis strain 39M NODE_30_length_75839_cov_54.7957, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8818 29 100.0 32 ............................. TCCGTTGGCTATACCATTCCGGGAACTCTGGC 8757 29 100.0 32 ............................. CCACGGGGCAGGGTGATCTGTTTGACGGTTCG 8696 29 100.0 33 ............................. GTCATTTATCTAGGTCAGGCCAATAGTTCCGGC 8634 29 100.0 32 ............................. GCCGTTGTTGGCCTGTTCAATGTCAACGCTCC 8573 29 100.0 32 ............................. CGCGAATCAGCAACTTCATCGACGGAAACGTG 8512 29 100.0 32 ............................. ACCTTCTATCAAAAGCAGGCCGAGCTGTTCCA 8451 29 100.0 32 ............................. GCACTCGGCACGAATGGGCCTGGCCGTGTCCG 8390 29 100.0 32 ............................. CGAATTTGGATCATGCTCTTTTGCGGTATTTC 8329 29 100.0 32 ............................. CCGCGCTGTACGTGCTATACGCCCCGTATGAC 8268 29 100.0 32 ............................. TCCGTCGACCCGAAAACGCTTGCCGCTGAAGC 8207 29 100.0 32 ............................. GCAGCAGCCGAATACAATTTCTTGATGAAGAC 8146 29 100.0 32 ............................. GCCATGCGCCTGGACATCCTGGAAGCCATTCG 8085 29 100.0 32 ............................. TTTGATCCCGTCTGTGATCTGTTTTCGATTCT 8024 29 100.0 32 ............................. ATATCGAGGCTCTCGAGGTTCACCGGCATACG 7963 29 100.0 32 ............................. AGATTGCCCGGAAGCGTAAGTGGCAACTTGTC 7902 29 100.0 32 ............................. ATCGGCCGCAACGGCAAGCCCAGTGATGCGTA 7841 29 100.0 32 ............................. GAACACGACAACGTCCGCAACGTCGTGCCGGT 7780 29 100.0 32 ............................. CCCGGCTCGAGCTGCTGCGGCTTTCCCTCGAT 7719 29 100.0 32 ............................. GGCTTCAACTGGCAGCTCTCCGGCGCAGGCAC 7658 29 100.0 32 ............................. TCGCAGTACTGGACGTTGAGCATGGGCTCGTT 7597 29 100.0 32 ............................. GTCGATGGCCGTTGGTCCGAAGATCGCCTGCG 7536 29 100.0 32 ............................. AGCTGTCCAAGATGCTGCCCAATCTGAACGAG 7475 29 100.0 32 ............................. ACTCTGATTTCCCTCGTAAATATGCGTGGGCC 7414 29 100.0 32 ............................. GAGCCGCTGGCATGTTGGACGACGATGCGCTC 7353 29 100.0 32 ............................. GTTGACGGAACGGCCACCGTCCCGGATCGCGA 7292 29 100.0 33 ............................. TAGTTATCGAACATGCTTTTCAATTGAGAGGCC 7230 29 100.0 32 ............................. AGGTCAGCCCCTGGGCGCGTTGCCCGGGGCAC 7169 29 100.0 32 ............................. TGTGATTGAGGTTCCTCGGAATGTCAGTCGTG 7108 29 93.1 32 .........................T..A GAAGAGCCAACCAGACTGCCGAAGGTCGAAGC 7047 29 75.9 0 C..........AAA...........G.GT | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : GGGTCGCATCATCCCGCTGATCGAAGAGGTGCTCGCAGCCGGCGGTATCCACCCGCCCGAGGCGCCGCCGGAGTCCGTACCGCCGGCCATCCCCAACCCCGACAGCCCCGGCGATGCCGGCCACCGGAGCCGGTGATGGCCTTTCTCACCGTGGTCACCGAGAACGTCCCGCCACGCCTGCGCGGGCGCCTGGCCATCTGGCTGCTGGAGGTGCGCGCGGGGGTGTACATCGGCGACGTCTCGCGGCGCACCCGGGAAATGATCTGGCAGCAGCTCGAAGCCGGGTACGAGGACGGCAGTGTGGTCATGGCCTGGGCCAGCCAGAACGAGTCCGGCTACGACTTCCAGACCCTCGGCAGCAACCGCCGCGAACCGGTGGACCACGACGGCCTGCGGCTGGTGGCCTTCCTGCCACCGACCACCGCAGATTCCACACCCAAATAATCGGTAGATTTTCAGGAGGTGATTTTTATCTTTGAGAACAAGGGGTTGCAGTTGGA # Right flank : CGCGACCCTACCGCCGCTGCCAGATCTTCCGGCCGCCCTGGTCTTCGGTCACCAGGTAGGGGGCGCTGAAGCGGTAGCGGGTGGCGGGCTGGTAGTCGGTGCTGCCGTCGGGGCGGACCAGGAGGATGCCGTCGGCGGTCTGCCATTGGCCGGCGTACTGGAGGGTGCCGTCGCTGTCGTAGCTCCAGTCGGAGCCGCCGCCGACGGAGCGGCTCCATTGCTCGACGCGGCCGTCGGGGGCGAGGTGCAGGGTGAGCACCGTGTTGAAGGAGGCGAAGCTGGCGCCACCGCTGTTGATGATGTCTTCGTGGACCCAGGTGCCGACCAGCGCCGGGTCCAGGGTGCCGGCGCCGGTGCGGGTGGCGCCTGTGGCGTGTGAGGGGCTGCGCTGGAACAGCGCCTGGCGCTCCAGCACCTGGCCGCTGACGGGGTCACGGGCGGCGAGGCGGGCGTTGAGCTGGTCGTTGCCGTAGGTGGCGGCGAGGGTGGCGATCACCTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19612-18910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANPK010000030.1 Pseudomonas otitidis strain 39M NODE_30_length_75839_cov_54.7957, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19611 29 100.0 32 ............................. TCTCGTCATGGGCGGCCCGTTGTAAATAGGGG 19550 29 100.0 32 ............................. TCCGACCGTGACGGCGGGGGCGGTGACGCCTA 19489 29 100.0 33 ............................. CAGGCCGCAACCCGTACCGCGCTGTACGCCATG 19427 29 100.0 32 ............................. TTAGTCGAAGAATTCCCCGCATCTTTTGATGG 19366 29 100.0 32 ............................. TACGACGTCCGCCTTTCCGGCATCCTCGACCG 19305 29 100.0 32 ............................. CGGAGAGAACACGACCAGGGCGGTCGCGATGG 19244 29 100.0 32 ............................. CGAAATACAACCCTACTCGTGTCATTTGTCTG 19183 29 100.0 32 ............................. GCGGCCCTGGCGCTGCTGATCTGGGGCGGCGA 19122 29 96.6 33 .....................G....... TAGAAATTTCCGTGATAGCCCTGAGCCGTGCGG 19060 29 100.0 32 ............................. GGTCTTGCGCTCGTTTTTGGCGATCTCGGTTC 18999 29 96.6 32 ........T.................... TCCATCGGCATCGCCCCCGAGGCCATCGCCAA 18938 29 93.1 0 ......................C.....C | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GAAGAGACCATCCTCCCGCGCCTGTACCGCGAAGCCCCGGTCAACTCCATCTGGGAAGGCTCCGGCAACGTCCAGTGCCTGGACGTCCTCCGCGCCCTGTCCAAGGAGCCCGGCGTGCTCGACGCCCTGTTCAGCGAACTGGGCGACGGCCACGGCGACGCCCGCCTCGCCGCGCAGATCAACAACCTCAAGGCCGCCTTCCACGACACCGCCGACATCCAGTACCGCGCCCGCCAGCTAACCGAAGACGTCGCCGTCGCCCTCCAGGCCAAGCTCCTGCTGGAGGCCGGCAACGCCACCGTCTCCGACGCCTTCATCGCCAGCCGCCTCGGCGGCAGCGGCCGGGTCTACGGCACCCTCCCGCGCGGCATCGACGTCGAAGCCCTGGTCGCCCGCAGCACCCCGCACCTGGCCTGACGCCACCCTGGCAACAGGGGAAAACAGCCGGTAGATTTTCCGCTGCCGGCTTTTCCCTCTGGGATCAGCGGGTTACGGGAAGA # Right flank : ACCCCAAACCGGAACGGCCAGGCCCCACTGCGCGGCCTGCGTAGGATGGGGTGAGCTCGGCGAACCCCATCACCCAGCCGCGCCCCGGCCCTAGGCCGCCCGCTCCGCCAGCCGGCGCTGGCCGGTCAGCGCCGTGGCCACGAATAGCGCCGCTGCCAGGCTCAGCGCCAGGGGCAGACCGTGGGGGCCGGTGCCCATCAACGCGCCGCTCAGCAGCGGCCCCACCAGGCTGCCGATGCCCCACAACATGCCCACGCAGGCGTTGGCCGTGACCAGGTCCTGCCCGCTGAAGCGCTCGCCGATGCGCACCAGCGCCAGGGTGTAGACGCCCCCCGCCACCGCCCCCAGCAACACCAGCGCCGGCCACAGCAGCGTGGGCCGGGTGATCAGCCAGGGCAGCGCCATGCCGATGCCCAGCGCCGCCACCCCGCAGACCAGGTGCAGGCGGCCGCGCTCGGTGCGGTCCGACAGCCAGCCCAGCGGCACCTGGCAAACCATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16232-15471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANPK010000031.1 Pseudomonas otitidis strain 39M NODE_31_length_73753_cov_52.8985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16231 29 100.0 32 ............................. ATGGACATGATGGGTAAGGAGGGCCATTACCA 16170 29 100.0 32 ............................. TTTCGGAGGGCACGCCCGTTCCTGTTGACCAA 16109 29 100.0 32 ............................. GAAATCGACTCCTATTCGTCCAGGGTCCAGCA 16048 29 100.0 32 ............................. CCGCGCGACTGGTGAGGCCGCCACGGGTCGAA 15987 29 100.0 32 ............................. TCGAGCGGCGAGGCCGCCGGATCCATCAACGC 15926 29 100.0 32 ............................. GCGCTTGCTGTAGTTATCAAGGCTATTCGTGG 15865 29 100.0 32 ............................. AAAACCCCGCCGAGGCGGGGCTATGGGAGTGC 15804 29 100.0 32 ............................. ACAACGTCCGCTTCCTGCCGCCTCGTGGCCAG 15743 29 100.0 33 ............................. CCGTAGGTGTTGGTACCGGCCTCGCGCAGGTCC 15681 29 96.6 32 ..............C.............. TTGCAGCCGGCGCCGGCGATGACGGGCTTGGC 15620 29 100.0 32 ............................. GCCCTCGTTTTCTGCATGGGTGGGTGCAGTCT 15559 29 96.6 31 .............A............... AGCCCGCTCCCCCACACGCTTGGCCCAGATC 15499 29 82.8 0 ...........A..C...........TAC | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : TGGTGATCAAGGCCGGCTCCGTCACCTGGGAGGAAGGCGTCGACTACGACCTCACCGATGCCGGGCTGCCCAAGATCAAAGCCGGCGGCAAGGCGCTCGCCGCCGGTACCGACATCACCGTCGACTACAGCCATGGTGCCCACGTCGTCATCCAGGGCCTGGTCAACTCCGGCCGCCGCTACCGCCACGTGTTCGTCGGGCTCAACGAGGCCGACACCGGGCGCCCGGTGGTGATCGAGCTGTACCGCGTGGTGCATTCGCCGGCCAACCTGCAGATGATCTCCAACGAGTTCGGCGGCCTGGACTTCACGGCAGAACTGGAGATCGACCCCAGCAAGACCGGGCTCGGCATCTCCCAGTTCATGGTGGTGAAGTACGTGGACTGACCAGCCCGGCAGGGCCGCGAAAAGCGGCCCTGCCGCCACACCGAAACGGGCTGAAAGGTTGGTGGGAAAAATAGCGGGGAATTTTCCTTTTTACGGCAACGGGTTAGATTTGGT # Right flank : AGGCTCTGGTACATTCGGGGCCGTTTTGACCAAGGAGTGGTGTGATGACGTGTAGGCAATGCGGAGCCCCCGCAAGGGATGCTGATTCAGGGCTGTGCCCCGAACATTTCGAAGAGCAGCGCCAGGCCATCGTGGGGCGTCTGAAGCGGCCCAAGCCGGTTGCAGCAACCCCGGCGCGACCGCAGGAGCGGGTGCCGTTGTGGGTAGCGCTGCTGCTGGTGGTGCTGACGCTGGTCACCGGCATCTCGGTGGTGGGCATCCGCACCACCTCCGGCAGCCCGGAGCCCTGGACGCTAACGGCGATGGTTTGCGCGGTGCCCACGGTTCTGCTCTGGCGCCACTTCATGCGCCGCTACCCGAAAACGCTCTGGCCGGTCGGTTTCTCGCTAGCCGGGCTGGCGCTCGTTGCTGTCCTGGTCAACTGGGCCTACGTGTTTGTAACCACCCCCGCACAGTCATCGCTTGTCGGTACACAGACCGCCAGGGGGGCAGAAAAATCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //