Array 1 12-364 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJU01000048.1 Streptomyces clavuligerus strain ATCC 27064 NODE_48_length_20263_cov_46.3777, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 12 29 100.0 38 ............................. ACCCAGGCCCTCGGCCTCCACGTCCAGCTCACCCACCG 79 29 100.0 35 ............................. CTTGACGGGCGACGCCATCCCATGGCGTTCACCCT 143 29 100.0 35 ............................. GCGCGCGCTCTCGGCTACCCCGCTGCCCGGATCAC 207 29 100.0 35 ............................. CTCCACGTCTCCGCAGAAGGCGACTGGGCCATCTC 271 29 96.6 36 ..........T.................. CACACTGCGCCAGGACGCTCCCGACTCGGCGTGGGT 336 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 99.4 36 GTTGCGAACCCACCAGGGCTGATGACGAC # Left flank : GGGGAGGGGTCG # Right flank : CCCGAGAGTAAAATCGCAGCTCAGAGGCCATCCGCGAGCCTCGCTGGAGGCGGCTTCTGCGGCGACCCGCCGGTACTGCATCCGCCCAGGTCAGATGATGTCCCCCGGCCCCCCGAGGTCCACGCCCAGCGTATCCGTCTCGACCATCTCCGGAGACCGCACGGTATAGGTCCTGATGCTGTCGTACCCCGGATCGATCGCACCGCTGAGCGCGGCCATCAGCGCCCGGTACTGCGCCGCCGACAGCTCGCCCTGGAAGACGCTGCGCTGCGTCCAGTGCAGATACTTCCGGCAGGTCTTCAGCACCCTGGGGTTGCGTTCCACTGCCGTGTCATAGATGAGGATCACGAACACAACCCCTCACCACCACGGCCGGAACGGCTTGTATGGCTGGCCCTCAAGACACAGGCGGACGATCTTCAGGGCCTCCAGGTGGATCAGCTCCTCGTAGCTCACCTTCCGCTTGAGGGAGCGGTGGTAAACGGTCGTCGCCAGCTCCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCACCAGGGCTGATGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 9882-9459 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJU01000048.1 Streptomyces clavuligerus strain ATCC 27064 NODE_48_length_20263_cov_46.3777, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 9881 29 100.0 37 ............................. CAAGGCCGACCCGATCGCGGACGAGCTTGACCGGCTG 9815 29 100.0 36 ............................. GCGTCGGCCTCATCGAGCCAGCGTCGGGTCTCCGCC 9750 29 100.0 36 ............................. ATGTGATTGCGTGGGACGGTGACCGTGCCGGTGCGG 9685 29 89.7 37 ..............C..G...G....... ATGACCATGCGGACGGCGGCGACCATGGCGTCGGGGC 9619 29 93.1 36 ..T.C........................ AGTGGCTGGTGACCCGCGTGCAGATGGCTGATCTCA 9554 29 93.1 36 ........T................T... GGCCTGGAGAAGGAAGCAGGGACGGATCGCCTTGCC T [9543] 9488 29 93.1 0 .................G..A........ | C [9474] ========== ====== ====== ====== ============================= ===================================== ================== 7 29 95.6 36 GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Left flank : ATGCCCAATTTCGATGTGATTTTGAAGCGTATGGGACCCCCTGCGCGCCGATAGGACACTGGGAACAGAAGGGACGAGTAGGGCGCAGGCATAACGACTGCACAACACCCGGTACCGGAGACGCCAAAAGCGCTGCGGGAATCGCACCTGCCTGCGATTATCGGTTCGCTTCACCGAACCTCCACATCGTGCCACGGAGGTGAAGCAACCGGGGCAAGGCGTCTGGAGCCCTATCCTTGTCCCCGGCAAGGTCACGGACCCATGGGCTCCGGGCACCATGGCCACACCATCGGCCCCCGTAGCTCAGTGGATAGAGCAGGCGCCTTCTAAGCGCTTGGCCGCAGGTTCGAGTCCTGCCGGGGGCGCACATCGCCCGATCATGTAGACCTCCCCCCGGAGGGCCGCCCGTGACACTTGGCGGGCACCTCTGGCCTCGGCGGGTGCATTACCGTCGGGTCGCTGCGGGAGTGGCTGGCCGAATGCTCCGCGTACGTCATCCC # Right flank : ATCCGTTCGGCCTGACCGGCGACTGCCCAATTCCCCCCTCCGTCAACGCGGACCCGGGATACAGCGACGGAGAGCATCAGGACCGTCTGCGCCCCGCCCCCTGTCAGGCAGGCCGGTGAGGATGATGCAGATTGCGGTGACCCCAGCGCTCACGTTCAACAGCCACGCATCAGACTTAGCCGCTTTCGCGGCAGCCCGGCCATTCACGTACACCACCAAGAGCCCCGCACCGCAAAAAATATGATTACTTCGTCGGCCAAATTTAGCCAGCGCGCATGCGCCGATGCAGCCCATTGATCTCCCCTACGGTCAGCCCCTCTCGGATGGAGTTGTAGTTCAGCTCTTTCCGAGCAAGACCGTTGGCATACGAGCGCCACGAATAATCGACCCGTTCAGCGCAGGGCCACTGGACAGGTGAGGCCGTCGGCCCTCACAGCCGACGGCCTCGCCCTCAACCCAACAGGGCTGATAACGAAAAACCTAACTGCAACTCCACCATT # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3149-3359 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJU01000513.1 Streptomyces clavuligerus strain ATCC 27064 NODE_513_length_5695_cov_29.2574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3149 28 92.9 33 ....C........A.............. GTCCTCGCGCCGAAGGCGGGGAAGTGGGACGCC 3210 28 100.0 33 ............................ GAGGGTGCGCAGGCGCTGGGCGGCTGCGCGGAG 3271 28 100.0 33 ............................ AAAGAAGGGCCCCTCATCTCCGCCCCCTCTCGG 3332 28 96.4 0 ......T..................... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GAACGACCCCCGCGCGGGCGGGGCGGAT # Left flank : CCGGTCGACGTCCCCGTTCCGCGTGAGGTACGACGCCGTGTTCTGCGGCGTGGTCCGGGCGTGCAGGGCATGGACGGCCCCGTCCCACGAGTATCTAGCGGCATCGCCGACCCAGGCGAGTACCGTGTCCTCCCCCTCCTCCAGCACGGCCAGGACGGCGGCCCCGGTCGGCTGCCCCGGGTCTGCGACCTGGCGCCCGGCGGCCGTCAGACCCGCGCGGGCGCCGTACAGGGCGCCGTATCGCACGGCGGTCCGCGCGCACAGCAGCCCGACCGTCGGCGCACCGGGCTCGTGCCCGGAGATATCGACAACACACAACCACCCCTCCGGCCGCCGGCCAGAAGACGGAGCGGCTGCCGGCACTGTTCCGTGGGTTGGTGCCCTGACGGCTGACCGCGACGACGATGACGGCCGTGGTGGTCATGGTCTCCCCTGGCGCCGGTGTGACCGCCGACCGTAGCCAGGGAGGTGTATGCACTCGACCCACAGTGTCATCGCGA # Right flank : TACTTCGTGACCTGGGGTGTTGTCAGGTGATCATGCTGTTTTCATTTACCTGCATCTGGGGCTGGGGCTCCGTTGGTCCGCGGCGGGGGCTGGGTGTTCAACGGTATCGGGCGGTGTGGTGTCGTGGGGTTGTCTGGGTCGGTTCTGGTGTCCGGAAGGCGGCTTGCCCCGGCTCGACTCGATCGGGGTGTGGTGGAGTCGGCCGGGTCCGCTGCCGGTTCAGTGGAACCCCGCCTGGTGGGGGATGTCTGCCCGGTGGTCTTCGAGGGCGGCGTGGAGGATGCGGGTGGCGGTGGTTCCGCAGAGGGCGACGGCCTGGTCGTGCCCGGCGAGCTGCGCGCAGCTGCGGACGAGTGCCGGATCGGCGTGGGCGTCGGCGCGTACGGCCGCCCGGTCCCACAGGTCCTCGGGCGCTTCCTCGACAGTCGGGTGCTCGACAAGATCGAGTCCGGCAGTCTGGCTTTTCGCGGGCGGTGAATGTTGCTCGGGCGGCCTGGAAC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACGACCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 2 4376-4103 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJU01000513.1 Streptomyces clavuligerus strain ATCC 27064 NODE_513_length_5695_cov_29.2574, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4375 29 96.6 32 ............................G TCGTTTTCGGTTCCTTGCTGGCTTCCCTTGCC 4314 29 96.6 32 ............................A GAAGGGCCTCTTCGCTATCGCCCTGTTGCTGT 4253 29 100.0 32 ............................. CCTCCGGGACTGACAAGGGACCCGGGACCCTC 4192 29 93.1 31 .....................G.....G. GTCCTCTTTGGAGCGGCCTGGCTGGCCGCGT C [4166] 4131 29 89.7 0 ........T.....T......G....... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 ATCCGCCCCGCCCGCGCGGGGATCGTCCC # Left flank : GGACACAGGTGTTCCTTTCACGAGGTAGGGCCTGTGATCGCGCCGCCCGGAGGGTCAGAGTTTCGGGCGGCGCACCTCCATGTTCAGGGGCATCCTGCAGTCCCACACCCACCACCAACACGACCCCCGTACAGGCGAGTTGATGACGGATGGGCAGCACAGGAGCACAGTCAGAAGCACGGACGGTGCGGGTGAGTACGACTGTCCCCGTGGCTCTCGGGGGCAGCAGCCGACCCTGGAGCACGGCGGCCGACGGCCGGGCCGCGGGCGTTCACACCGAGGCGGCGCAGGGACCTGTTCAGAACCCGGTACAGGGCATGCCAGGCCCAGCCAGACATCCGGAGATCCGTGCACGGGCGGCTTCCTTCCGGAACACCCCCCGCACTGGTCATGCCGACGGATACCGTGCACCTACCCAGACTGGACGACACAAAGGCCGGCCCGGAATGCAGGTAAACGAAAACAGCATGATCACCTGACAACACCCCAGGTCACGAAGT # Right flank : CGGGGTCGCCATGTCGGTCTGGACCTTCGCCCTGTCTGCCCGCGCCCGCGCGGGGCTCCGCTCTGGGTCCAGCGGGTCGGTGACCACATCAAAGCCACCGACCGCGGACGGCGGTGTCCGGATCATCCGCACCGGGAGTCAATGCCGCGGCACTCCTCCGCCACGGCCGCCAGGCGCAGCACCTCAAGGGCCACGGACCCGACCCCGGACAGGCCGAGCGTGAGGCGACGGTGCCGAACCCCGAGTTCCAGGCCGCCCGAGCAACATTCACCGCCCGCGAAAAGCCAGACTGCCGGACTCGATCTTGTCGAGCACCCGACTGTCGAGGAAGCGCCCGAGGACCTGTGGGACCGGGCGGCCGTACGCGCCGACGCCCACGCCGATCCGGCACTCGTCCGCAGCTGCGCGCAGCTCGCCGGGCACGACCAGGCCGTCGCCCTCTGCGGAACCACCGCCACCCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGACAT # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCCCGCGCGGGGATCGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82-292 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJU01000823.1 Streptomyces clavuligerus strain ATCC 27064 NODE_823_length_3338_cov_16.0349, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82 28 85.7 33 ..............T.T.......G..T GTCGTGCTCGGGCTCGCTCACCGGGTCTCCTTG 143 28 100.0 33 ............................ CGAACCCCGGTGTCTCGACGGTTGCCTGGAGCA 204 28 100.0 33 ............................ ATCCCCAGACAGATCCGCTCGGACTCGCCCAGC 265 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GAGCGACCCCCGCGCGGGCGGGGCAGAC # Left flank : ACCTCCACCAGTCGTGGGGGTGCCCGATGACCGCGGCCCGCCCGCCGCCCGCCGTAGCTCTTTGAACGGCACGGGACACGGG # Right flank : CACTTCGTGACCTGCGGCGTTGTCAGGTGATCATGCTGTTTTCGTTTACCTGCATTCGCGGCTGGTCCTTGTGTGGTGCGGTCTGGGTAGGTGCACGGTATCTGCCGGAGTGACCGTCGCGGGGGGTGTCTCTATGTCCTTCGTCAAGGATGTGGTGCCGGGTGTATAGGTGTTTGTGGTGGTTATGCGGCGAGGGCGGCGGTGGGGGTTCGGGACTCGTAGAAGGTTCCGTCGCGGAGCATGGCGAACAGGACGCTGACGCGCTGGCGGGCGAGGCGGAGGAGTGCCTGTGTGGTGCTCCTGCTTCTGGTGCGGGCCGGGTGGAGTGGTTTCGTGGTGAGTGTGAGCCGTACGCGGCCTGGAAGGCCCGTACGCCCGTACTGCTGCAGGTCTGCCGGTCGTGTCCTGCGCGGGCGGCGTGCTGCGGGCTCGCGCTGCGGGACCTGGAGGGGATGGACCTGAACCGGGGTGAGGACGACATGGTCCGCGGCGGTCTGCTG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCGACCCCCGCGCGGGCGGGGCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 253-103 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJU01000786.1 Streptomyces clavuligerus strain ATCC 27064 NODE_786_length_3527_cov_32.0659, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 252 28 85.7 33 .AGT..C..................... TCGGGCATCCGTCCTCCTGTGGTGGCTCACCCC 191 28 100.0 33 ............................ CTACGCGTCCGATCCGAAGCAGTCCCCGATGTA 130 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 95.2 34 GGACGATCCCCGCGCGGGCGGGGCGGAT # Left flank : GTCAGCCCTTGAGCCACCTCCCCAGCTTCCGCGCTGCTCGGACCAGTAGGTCTTCGATGCGCTGCCGCAAGGTCGGTTTGGGCTTTCCGCGACGCCCCATGGGCGCCTCCCCTCAGAACAGTCACCAGTGGTTCCCGGCTGGTGACCTTCTTTTGGGTTCGGGCCGGCCCCGAGGGCGGGGGCCCGGACGCGAATCGTTGAGGGGAGGCGCCACGAAGCGCACCGGTACTCTACCCCCGGCGCCCAGTCGTACGGTCCGTTCCGTCAACTCCCGTACACGAACGTGCTACTTCCGCAGCCCCGGCCCGCCAGGCCGGTGCCGGAACAGACCCCGGGACCGAGCCACTCCCGCTCAGTGAAACCCCGCCCGGGGAAGACGCGAGGTCGTCCTCGAGAGCAACCTGGGTGATGCGTTCGGCGGTGGTTCCGCAGAGAGTGATGGCCGCATCATGTCTGGCGACTCGTGCATGGCTCCGGACGAGAGCCGGATCGCCGCTGCC # Right flank : TACTTCGTGACCTGGGGCGTTGTCACGTGATCATGCTGTTTTCGTTTACCTGCATTCGGCTGGGGCTCCGTTGGTCCGGTGATCTGTTGGCCCGGGGCTGGGC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGATCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 320-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJU01001350.1 Streptomyces clavuligerus strain ATCC 27064 NODE_1350_length_1084_cov_14.0554, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 319 29 89.7 32 .C.......................C..A CCTCAGCAGGCATGAGCACGAGGTGTTCATCA 258 29 100.0 34 ............................. TGGCGCCCCCCGGCGACGGTAAAGACGCTGCGGT 195 29 89.7 32 C..T.................A....... ATCACCGTGGACGGAGCCCCGTTCCCGTGGCT 134 29 79.3 0 G..T.................TG..C..T | A [110] ========== ====== ====== ====== ============================= ================================== ================== 4 29 89.7 33 ATCCGCCCCGCCCGCGCGGGGGTCGTTCG # Left flank : GTGCCGAACGTGGATTTCCAGGCCGCCCGAGCAGCATTCACCGCCCGCAGGAACCAGACTGCCGGACCGACCCTGGTCGAGTACCCCACCGTCGACACCGCGCCCGAGGACGTCTGGGACCGGGCGGCCGTACGCGCCGACGCCGAGGCCGACCCGGGCCTCGTCCTCGCCTACGCCCGCCATGCGGGCCACGACCAGGCGGTCGCTCTCTACGGAACCACCGCCACCCGCATCCTCCACGCCGTCCTCGAAGACCACCGCGCGGGCTTCCCCGGCCGGGCACCGCCCCGCTGAACCGGCAGCGGGCCCGGCCGACTCCACCGCAGCCCGAGCCGGGGCAAGTCGCCTTCCGGACACCGGAATCGACCCAGACAACCCCACGACGACCACACCGCCCGATACCGTTGAACCTCAGCCCAGCCCCGGACCAACGGAACACCAGCCGAATGCAGGTAAACGAAAACAGCAAGATCACCTGACAACACCCCAGGTCACGAAGT # Right flank : TGGCTCCAGCGTGCCGGTGACCACATCAGCACGGCTGACCGCAGGACGGCGGCGCCCCGACCAGGCCCACCGGGTCACCGCCAGCACTCCTCCGCCACGACCGCC # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCCCGCGCGGGGGTCGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4045-3805 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKJU01000314.1 Streptomyces clavuligerus strain ATCC 27064 NODE_314_length_8768_cov_26.3397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================ ================== 4044 27 89.3 60 A....-...............A...... TGGCTGGTGGAGTCCCCGTCGACGACGTGGACCGAGCTACCGCCGCGCCCCACCCAAAAA A,T,G [4036,4040,4042] 3954 28 100.0 33 ............................ CTCCGGGGGCGGAGGGAGATGGAGCGGATCCGG 3893 28 100.0 33 ............................ CTGGAGCAGGCCGCCCGTACCGACGTCGGCGTC 3832 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================ ================== 4 28 97.3 42 GGACGACCCCCGCGCGGGCGGGGCGGAT # Left flank : GGCTCGGGCTGCGGTGGAGTCGGCCGGGTCCGCTGCCGGTTCAGTGGAACCCCGCCTGGCCGGGGATGCCCGCGCGGTGGTCTTCGAGGGCGGCGTGGAGGATGCGAGCGGCTCGGGTTCCGTAGAGAGCGACCGCCTGGTCGTGGCCCGCGTGGCGGGCGTAGGCGAGGACGAGGCCAGGGTCGGTCTCGGCGTCGGCGCGCACGGCCGCCCGGTCCCAGGCGTCCTCGGGCGCGGTGTCGACGGTGGGGTATTCGACGAGGTCGAGGTCAGTGTTCTGGTTTTCGCGGGCGGTGAGGGCTGCCCGTGCGGCCTGGAACTCGGGGTTCGGCACGGTCGCCTCACGCTCGGCCTGTCCGGGGTTGGGTCCGTGCTGTTCGAGGTGCTGCTGTGTCTGGCGGTCGTGGCGGAGGAGTGCTGGCGGTGACCCGGTGGGCCTGGTCGGGGCGCCGCCGTCCTGCGGTCAGCCGTGCTGATGTGGTCACCGGCACGCTGGAGCC # Right flank : ACTTCGTGACCTGGGGTGTTGTCACGTGATCATGCTGTTTTCATTTACCTGCATCCGGCTGGGGCTCCGTCGGTCCGGTGCTCTGTTGGCCCGGGGCTGGGGTGGGGTTCAACGGTATCGGGCGGTGTGGTTGTTGTGGGGTGTCTGGTCGCCTTCCGGTGTCTGGAAGGCGACTTGCCCCGGCTCGGGGTGTGATGGAGTCGGCTGGGTCCGCTGTTGGTCCAGTGGGGCGGTGTCTGGGTGGGGATGCCTGCGTGGTGGTCTTCGAGGATGGCGTCGAGGACATGGTTTGTGGTGGTTCCGTAGAGGGCGACCGCTTGGTCGTGGCCTGCGTGGCGGGCGTAGGCGCGGACGAGTGCCGGGTCGGCCTCGGCATCGGCGCGTACGGTCGCCCGGTCCCACAGGTCCTCGGGCGCTCCTCGGCCATGGGGTTTTCGACGAGGGTGGGTCCGGCAGTCTGGTTCCCGCGGGCGGTGAATGCTGCTCGGGCGGCCTGGAAC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.59, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGACCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA //