Array 1 193947-193310 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036170.1 [Clostridium] scindens ATCC 35704 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 193946 33 100.0 34 ................................. ATGACAATGGCATAGAAGGAACAACGGTCTTCTC 193879 33 100.0 35 ................................. GTTCTCTCCCGATCTGACACAAAGAGCCTTGCCTG 193811 33 100.0 33 ................................. TCTAACATATTAGGTTATTTTAATAATAGATGG 193745 33 100.0 35 ................................. AAAATGGAAACGTTGAAAAACTTCATTGCAGAATT 193677 33 100.0 34 ................................. CTGACGCGCAGAATTGGAACCCTGTATATGAGCC 193610 33 100.0 35 ................................. AGTATCCTACAGCAGACGCGCCGTATTCTGCTTGC 193542 33 100.0 33 ................................. TCTATCTTGAAAGGAGGTTTTCAGGTGGCAATC 193476 33 100.0 35 ................................. CTCTAAATCCCCGTTTTGTTAATGAATCCATCATC 193408 33 100.0 33 ................................. TTTAAGCCGGTATATTGGACAGTATCAATAACC 193342 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 100.0 34 GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Left flank : CAAGTTAGGTCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATCACAAGTTATTTTGACGCAGGGGCAGTATGCCTCTGCGTCTTTTGAATATTGTTAGAAAGATTTTCTTACTATAGCCAACAAGAATTAAGGGTGGTGGAATAGTATGTCTAAAGGAGTTCGAGACGGCAGTCCTTCTTATCATTAAAACTTTATGAAAAAGCTAATTGAGAAATTAGAAATATAAAAAAAGAATAAATTTCCTTGAAAATTAGATATCGATTCAGTAGTGCGAATGTGAAGCGTACATAAAAATCCCAGGATATTCGCACCAAAAAAGTTGCACAAAAATAGTGTATTGTATTACAATATAGATTAGATGAGAGAATGTATCTAAAGGTAACTGTAATATAGCACAAAAATTTTGCAGTTATATATTAAAAATTGGATAAGTTTGCT # Right flank : ATTCCACGGCTGTGAGCAGCCATACTGCCAATGCGTTGTTCCCATGCGGGAACTTGGATTGAAATTAAAGCATAGCCAGTAATGTTGCAAAGTCAAATGCGTCGTTCCCCACATGGGAACGCAGGTTGGATTATTACCATAGTAGATATAGGCGCTCCTGTACAAGGTTGATCCACTTGGGAGAATTCGAATATCGATACCTCTTAATGGGCATAATGGCTTGACTACATCGTCCTTTAGAGTATGAAAGACATATTTTGAATCGAAAATCAGCCTTTTACCGCAAAAAAAGCAAGGCCTATTTTTTAAAACAAACCATACTACGAAGTTATTAAGAATTAATCAATATGTTTATGCTATATTTATACAATTAAAGGGAAATAAAATGGATTTTAAGCAGAAATGCGTAAAGATTTATAAGTTTTTATTATATAAAGCAAATGCCTATAGTTCAGGGCGGCGGAGATTTTTCTCCGCCGCCCTGATTACAATACCAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 1473945-1474841 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036170.1 [Clostridium] scindens ATCC 35704 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1473945 32 100.0 35 ................................ TAGGAAGGAGGGATAGCATGCAGAACGGACAGTAT 1474012 32 100.0 33 ................................ ATGTATGGTCCTCTAACTCCGTCTACCAATAAC 1474077 32 100.0 36 ................................ ATATTCGTTCATTAGTTTCCCTTTCTACTAACCGTA 1474145 32 100.0 35 ................................ GATGTATATAGTGTTAAGATACTTTAACAGACTAC 1474212 32 100.0 34 ................................ ATTCTGTGTCATGAGCAGGATATCTGAAATCTCG 1474278 32 100.0 34 ................................ ACAGAAAAGTCCACAACCTTCCCTTTCTCTGCTA 1474344 32 100.0 35 ................................ GATTCATAAAACGCCACATATTAGAAAATGTGTGG 1474411 32 100.0 34 ................................ AATTAAAGGTGGTGGTTAACTTGAAGGAAAGAAA 1474477 32 100.0 34 ................................ ATCAAATTTATATCGTTCCGTTCCAAATCCGCAT 1474543 32 100.0 35 ................................ TCTTTTGGGTACTCGATTCCGAGTATCTCCATCAA 1474610 32 100.0 36 ................................ TCTATCTGCTTATTGTGCTGTGTAAGAACTATTATC 1474678 32 100.0 34 ................................ AAATCACCTGTATAATTAATTACGCGCCCATTTT 1474744 32 100.0 34 ................................ TCTTCTGGTTTCTCGCACCTCTCAAATTCGATAA 1474810 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 100.0 35 GTCTCCACCTGTGTGGTGGAGTGGATTGAAAG # Left flank : ATTATGCGAAATATAACCAGGCGGATATCAGATATTGTAGATAGGTATGGCGGATATATAGATAGAGAAAAGGCAGAAACCATATGCGATATGGCCAGGGAAATCAAACAAAAGAATGCAGAGATATATGTATGCCATCTAGAGCGATATTCCAGTAGAAAAGGCGAAAAAATGGACATGAGCGGTGTGATGGGATCATTAGCATATCAAGGAGAACTCACAGCGTTTACACCTTGGCTAAATGCGGCCAGTGTACTTCATATAGGCAGAAATGTGACATTTGGGTATGGACAGGTTAACGTCGTCTTTGCCTAGCAATTGAAATTTGGTGCGAATGTCAAGCAAACATAAAATTCCAGGGGGATTCGCACCAAAAAAAGATACAAAATGGAATGGTAATGCTAAGAATATGTAATAAAAACTGGTGATAAATATATGAAATAATAGTTAATTTGTTGGAAATTAACAAAAAGTCCTGTATAATATTATATGATATTGCA # Right flank : GAGGGATGACAATGCTAGTCTGAGAAAGAGACACATGAATCTGCTGGCAGATGGGCTCGGTATGATCCACCATTCTTTGAAACATAAGTTCAATGTAAGCATCGAAATCATGTTTAAAACGTGATAACAGGGAAGTATCGGGGACTTTAGAGAAACCTGAAAGCCGAATAGAACTCGGGTGGAATAAATTCATGGAGATCAAAGTGTTCTGAAAAAAGAACAAAGAAAGAGGGTAATTGTCAATGAGTTTGCTTTGAAAGTCTGAAAAAATATCATTTAAAGCGATCTGTTGATATTTAGCAGTCATAAATTTTCTCCTCCTCAGGAGTTGAAATGTATTGGTGTCGTTACCTATATCTTACCACCCGTGGAGAGAAAATTTATATAAATCAAGTAAGAAACCCCAGTAAAATCAAGGAGAACAGCATTTATCAAATGCCTAAAGTACACAGAATAAGAGGAGAAATGAGCAAATGAGAAAAGAAGCAAGTTTAGCAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACCTGTGTGGTGGAGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 3 1966370-1969023 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036170.1 [Clostridium] scindens ATCC 35704 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1966370 33 100.0 34 ................................. GAAAAAAATTATTATGTGGTTCCAGAGCCTGGAG 1966437 33 100.0 34 ................................. GTGGCGGAGTATGTGAAGAAGTTTGGAAGCCTGG 1966504 33 100.0 35 ................................. ATAGCCAAATCCGCCATTGGTTCCAATCGTTCTTT 1966572 33 100.0 33 ................................. ATATTTTCGGTTGCTGAATTGCCGGATTAAATC 1966638 33 100.0 34 ................................. GGCCATGCCCCAATCAGGCAGCCTTCGATGAACT 1966705 33 100.0 33 ................................. ATCACTCGTCTGTGCGTCAAAACTCTCATCCGC 1966771 33 100.0 34 ................................. CTTTCTGCCGCTTCTTGATCGGCAATGTCTGTAG 1966838 33 100.0 33 ................................. GCCGTCGGGTCCTCCTGCCTGGCCAGGCGCCGG 1966904 33 100.0 35 ................................. AATAAAAACTGTTGACATTATAACACAAATGTAAT 1966972 33 100.0 33 ................................. TTATCCACGAAGGCTCTTGAAACCTGGAATTCT 1967038 33 100.0 35 ................................. AATTCTTTCGCCAACTGTCATTGTCACAACTCCTT 1967106 33 100.0 35 ................................. ATATATGCTACGGCAATCTCTTATAAGCGGATATG 1967174 33 100.0 34 ................................. AACTTAGACAGCAAGTCCGAAGCCAAAAACAATT 1967241 33 100.0 34 ................................. GTCATTATAATAATAACACAGCAAAAACGAACAA 1967308 33 100.0 36 ................................. TCATTTTCTGTACGGCACTCCTGAATTGCTTTCTCC 1967377 33 93.9 33 ....T......C..................... AATTCTTTCATGTCATCCCCCTATTCTACTTCC 1967443 33 93.9 34 ....T......C..................... TTCCATATATTGTCATAGAGAAGTTGCAGTCAGA 1967510 33 93.9 35 ....T......C..................... TTTGTTGGGTCATTTCCAAGAAACCACTCTACGAG 1967578 33 100.0 35 ................................. ACCTTCCTTCCTCTTGGCCTGTATTGCATCCTCTT 1967646 33 100.0 34 ................................. GCTTCCTTATACCAGGAGTTCATTTTCTGAATCC 1967713 33 100.0 35 ................................. ATAGCCGCGCCACCGGCTACTGTTATCGCTGTTGC 1967781 33 100.0 34 ................................. TGTGCCACGGCCAGCATGATGTTGATCTTCAACT 1967848 33 100.0 33 ................................. CTTCCAAGGAAGCCTCCCCTGCTCTTCCAACAG 1967914 33 100.0 34 ................................. ACCTTATAAGGTTTGCTATCGCTTTGCTTAGGCT 1967981 33 100.0 34 ................................. GTTCTCTGCGATCAGTTCCCTTATTCTTTCTTCT 1968048 33 100.0 35 ................................. AACGCTTAATATATAGCCCTCAAACTGGCTATATC 1968116 33 100.0 34 ................................. AATGCGATCTATTCAGTAGTCTCATCCATTATGG 1968183 33 100.0 33 ................................. CAAAAAGAAGGAACAGAAAGAAGGAACAGCAAA 1968249 33 100.0 34 ................................. GTTCTACAATCGAAGATAAATAACTCATAATTGC 1968316 33 100.0 33 ................................. ATCCTCTGTCTGTTCATATGCAGCTTCATATTC 1968382 33 100.0 35 ................................. GTCATTGTAATAATAACATAAGTAAAACGGTCGGA 1968450 33 100.0 36 ................................. ATAGGCAAACAGCAGGATGTCAAAATCCGGATCCAA 1968519 33 100.0 35 ................................. GCATCAATGAAAGCGGCATTCAGGAATGTGCTTGG 1968587 33 100.0 35 ................................. ACGTACATGTTATCTATTAATCCTTTAGAACAACC 1968655 33 100.0 34 ................................. TATAAACATTGGCGCTCTTTAATCCTCCGTCTCC 1968722 33 100.0 35 ................................. ATAATATCCGCTTTCCTTGTGGCTGAAATGCTATA 1968790 33 100.0 35 ................................. CACCATTCCGGTAGTTATCGGAGATATTACAATCA 1968858 33 100.0 34 ................................. GAAAAGAAGGAGGTGGAGAAGGATGCCAAGAGTA 1968925 33 100.0 33 ................................. ATCATTTTGACCTCCTAAATGCCAGTTACCATA 1968991 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 40 33 99.5 34 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : CCGCCATTCTTATGGAAGTAGGTGATAGAATGCTGGTGTTAATAACTTATGATGTGAATACAGAGACAGAGGCAGGAAAGAGACGTCTAAGGAAAGTAGCAAAGCAATGCGTTAATTATGGACAGCGGGTTCAAAATTCCGTGTTCGAGTGCAATCTGGACGCCGCAAAACTTCGCCAGGTAAAGGCTATCTTGGAAGACATAATTGATAAAGAGGTTGATAGTTTAAGATTTTATAATCTAGGTAATAAGTATAAAGACAAGATTGAACATATAGGAGCAAAGAAAAGTTTTGATGTGACTGCCCCTCTTATATTCTAGAGTGGTTTAGTGCGAATGTGAAGTGCACATGAAAATGCAGGGAGATTCGCACCTGGATATTGATGATATGAGGGCTAGGGAAGTTATAATTTGTTGTGTAGGTGTTGGAAAAAGTTCTTTTGTTTGGCGTTTTGCATAAGAGATTGGCTGTATATTAGGAGTTTTATGTGCAAAATTGCT # Right flank : TAAAGAGTAGAGAGGGGCGTTTTGGTATGAAAATAGAAATAGGCAAAGAATTTCCACAGTATTTTAAGCCCTCATATCCAGAGGAATTTAAATTATTTTCACACTTTGAAACGACAGCAGGAATACCAACTGTTTTGTTTGCAATCACGACTTGGAAAGAGAATGGTAAGCCGAATGTGTGCTTTCATTCGTGGAGCTGCTTTCACGGAGATAAAACCGCTTTCTTTGCCGTGCTGGGGAACTTATATCAGCATACCCACACCTATGCCAATATCCAAAGAGAAAAATGCTTTTGTATAAACTTCCTTCCTATAAGTTTCTACGACAAGCTGGTAAACACCATTCGCCAAAATGAAATGGACGATGACGAATTTGCGGCAGGAGGGTTTACAGCTTCTTATGCCAAAACAATTCACGCCCCTGTAATCAATGAGGCGTTTCTTAGTATGGAATGTACCCTGAAAGAAGTACAGGATTTAAGCGGTGCGGGAATTACAGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //