Array 1 1447720-1446694 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044496.1 Lactobacillus acetotolerans strain LA749 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1447719 36 94.4 30 ...................A..............A. AGACGCTGGCACAACCAACAATGCAATTTA 1447653 36 91.7 30 ...................A..............AT GCTGAATCATCTTTGAAAGATTCATCGTCA 1447587 36 97.2 30 ..................................A. AAGTGCCATAATTAATCAGGATTTGAATCT 1447521 36 97.2 30 ..................................A. AAGTGCCATAATTAATCAGGATTTGAATCT 1447455 36 97.2 30 ..................................A. ATTCAAAATGGCCAAGCTAAACATTATCCC 1447389 36 100.0 30 .................................... TCAGTGATGTTAATGAATAGCCTAGAAAAA 1447323 36 100.0 30 .................................... GTTTAGCAGAAGCTAAGCATCTCAATATCA 1447257 36 100.0 30 .................................... ATTTATAATGAGATGTCGGTACAGATTCAA 1447191 36 100.0 30 .................................... TGCGACTACAACACAATCTCAACCTACACA 1447125 36 100.0 30 .................................... TGCGACTACAACACAATCTCAACCTACACA 1447059 36 100.0 30 .................................... AGGGCCCGAGACAGGAAGCACTTGTTTCTG 1446993 36 100.0 30 .................................... CAAGCTTTAGGAAAGCCTTTTCAGTTTTAC 1446927 36 100.0 30 .................................... CCAGTTGCCGGGCACCACGTTCTTCGAACT 1446861 36 97.2 30 ..................................A. AATTATCGGTTCTACGTTTATGCTCTTCAG 1446795 36 97.2 30 ..................................A. TCCTGGTGATAAAGATGATCCATTTGCAGG 1446729 36 83.3 0 ..................T....G.GCT......A. | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.2 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Left flank : ATTTGGTGGACAACAAGTATTTAAGGGTAAGCACTACACCAATTATGGTGTTGCAGCCGCTGCAGTTCGCTTAATTCAATCAATTCTTAATGATTCTAGAACTGAATTGCCAGTTTCAAGCTATCAAGCTAAATACGGTACTTATATGTCATATCCTTCAATTGTTGGTCGTGACGGTATTGTTCAATCAATTGACCTGCCATTAACCGATGAAGAAGAAAAACAATTAAAGGCTTCTGCTGAAACAATTAAAGCAAAGTCTGAAGCTTAATTAAGAATAATATTAAGTATATTTAGAAATAGATGGGTTTATAAAGCTCATCTATTTTGTTTATAAAAATTGATAAATACCTAGATTTCAAATACGTTTGTACTATATAATTTAAATAGTAATGGTTATAGCTTAACGATTATTTATAGTTAGTTGCTTGTTCTTAAGAAATTTCATTAACCTTATTTGATTGTGACAGTTTTTATTAAAAATTAATGATAAAATATCG # Right flank : GTACGTAGCAAAACCAATATGGCGGACTTAATTTTAGATATCTGTTAGATCAAAAAAGGCGATTTTAATTAATCGCCTTTTTCTTACGCTTTCTTTTAAAATTCTTAACTTTTCTTTTAAAATTCGTTTTACTGACTGGTCAATTTGCTTTTCTGATATCTCTTTATTTTTAACTGCTTGTTAATTGCTGGAATTCTGTTTTTGTAATTTCCTCCTAAAAGTAAATAATTACCTGCTTTTAGAGCTAAAATATCAGCGTTTGTGTGGTGTAATTTAGTATATTGTGTAATTGCACCCATTTGAAGATCATCAGAAATAATTAAGCCATTGTAATCCAATCTTCTACGTAAAAGTTTATGAACTGTAGATGAAAGGGATGCAGGTAGCTTAGGATCCATGTTTTAATAATAATGTGTGGGACCATGATACCATCTGCGCCAGCTTCAATACCAGCTTTAAAGGGCAACAGATCTTCGCATTCATAATCTTTAGGAGATTTA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1453107-1451735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044496.1 Lactobacillus acetotolerans strain LA749 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1453106 29 96.6 33 ............................C TAAAGCTAGTACGGATACCGATTCTGCAGTTAA 1453044 29 100.0 32 ............................. AGTCATTAGTCTTGTTATCTGCTAAGCGATAT 1452983 29 100.0 32 ............................. TTATATCGCAATATTATTGTCGGTGGTCGATT 1452922 29 100.0 32 ............................. AAAAATAAGGAAAAGCAAATGGATAAGAACAA 1452861 29 100.0 32 ............................. AAAAATGGGGAACGAGAAGCGGATTTTATTAG 1452800 29 100.0 32 ............................. CAAGTAAACGTACCTTATAGTCAGGATTATTA 1452739 29 100.0 32 ............................. TTGTAAAAAGATATTGGACTAAGAAAAGGAGT 1452678 29 100.0 32 ............................. GTGATCCAAGTGATACTGACACAGCTTATGAC 1452617 29 96.6 32 ............................C GTGTCGCTCTCCATTCGGACGGTCTTGCATGT 1452556 29 100.0 32 ............................. TCAGTTCCTAGCGCCACTTCTATGACTACAGG 1452495 29 100.0 32 ............................. TTGTAGCAAACGATTTGGGAACAATTATTGCT 1452434 29 100.0 32 ............................. TTGTAGCAAACGATTTGGGAACAATTATTGCT 1452373 29 96.6 32 ............................C ACATACAACCCTAACCACGTTGCACCACCTGA 1452312 29 100.0 32 ............................. TACAATCCACGTGCAGAATTTTATACCAATTT 1452251 29 100.0 32 ............................. AATATTTATCACGTTGTAGGACGCAAAGGTAG 1452190 29 100.0 32 ............................. AAAATTTATGATCTGTACTATCAAGCTGGTAT 1452129 29 100.0 32 ............................. ACTGAAAGCGCCGGCGCCGATATCAATTTTGG 1452068 29 100.0 33 ............................. ATACACGACCGTTATTTTCAACTACAAAAATAT 1452006 29 100.0 32 ............................. ATTCATAGCATTAACAGCCTTTTCGATAGCAC 1451945 29 100.0 32 ............................. ACACGCAAAGCTTTTTCAACAATGCGAGCCCA 1451884 29 100.0 32 ............................. ATCTGGTCTGTAATGAAGATAGTTCTCAACCA 1451823 29 100.0 32 ............................. AATACCGCATCAGGACGTTCTTCTCGCAGGTC 1451762 28 75.9 0 .................AT.T-...CTG. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.5 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GTTGATGAAGATAAAATTTTGTCGATTGGAGCAATTAAGATTTATCATAATGTAGTTTCTAAATTCTACCGCGAAATTAAGGTGGATTGTCAAATTCCAAGTAGTATTTCAAGGTTGACGGGTCTTACAAATTCTATCTTAGATAAAAGTGGAGTTCGCTTAGATCAGGTTTTAAAAGAATTCATGAAATTTATTAAAGGACTTCCATTAGTAGGTTATAATGTCAATTTTGATATTGATTTTTTAGAAAAAGCTCTAAATGATGAATTGAGTCTAAGTATTAATAACCAAGTTATTGATCTAATGAGTCTAGTCAAGAAAAAAGAAAAATTTTTAAATGACTATAAGTTGAAGACTGTTTTACAGCATTACGGTATTAAAAATAAAAGACCACATGAGGCTCTGTCTGATGCAAGAGCAACTTATGAATTGGCTTTAAAACTGTTGAAAAATGGTGTTTTGCAATTTTGAGAAAGGCTTTGTATCAAGGATTTTTTAGT # Right flank : ATTTTTACAGGTCAGTTAGTAGATTTACCGACAATAGCTAAAGAGACTAATAATTTAATTATTACCGCACAACACATGGATTCTTTAAAGCCAGGTAGAGGCATGGGTCATGTTTTACCAGAAGCTCTTGGTCATGTAGGAATTAAAGCCGTCGTTTTGAATCATGCTGAAAAGCCTCTGACGATTGCAGAATTAGATGCAACTATTAAGAGGGCAAAGGAAGTGGGGTTAGCTACTATCGTTTGCTCAGATACAGTTGAACAATGCCGTGCAATTGCTGAATTAAATCCCGATGTCATGATTTGTGAGCCTGATAGTTTAATTGGTACGGGGAATAGCAGTAATGAAGATTATATTAAATCGACAACAGCTGCTGTTCGTTCAGTGAATCCCAATATTTTAATTATGCAGGCAGCTGGCGTAAGTACCGGTCAAGACGTTGAAAAAATTATGCAACTTGGTGCTGATGGCACCGGTGGAACTAGTGGCATTATTAAAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1464190-1462575 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044496.1 Lactobacillus acetotolerans strain LA749 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1464189 29 96.6 32 ............................C ATAAGATCTAGTTACTGATTCACTGGACTTTA 1464128 29 100.0 32 ............................. ATTTGACCGGTGATTACTGTGTCAAATCCGGC 1464067 29 100.0 32 ............................. AGCCAACCCACTTTTCCATAGCAAAAACGGCA 1464006 29 100.0 32 ............................. CATATGATTTACCATCACTATCAAGTGCATTT 1463945 29 100.0 32 ............................. AATAGCTTTAGCAGTTGTGGAAGATGCAGCAG 1463884 29 100.0 32 ............................. GAGTATTTGTGTTGATATATTTTTGATAATGC 1463823 29 100.0 32 ............................. AAGCGCGGTGGTTTAACTAAGACTGGTTCAGC 1463762 29 100.0 32 ............................. GTTCAGTTCACTGACTTCAGGAGAATACATCA 1463701 29 100.0 32 ............................. ACCAACGCTGTTGTAATTGCTTTGCCAACTAG 1463640 29 100.0 32 ............................. AAAAAGCTTGGGTTTTAATCAAGCAAAAGTAG 1463579 29 100.0 32 ............................. AAGTGTCGTGGTAAGTTAACCAGAAAACCGTC 1463518 29 100.0 32 ............................. ATCTTCTTTTGCTTTCTCCCACGGGATCCATG 1463457 29 100.0 32 ............................. TATGAATCAGAATTAAAGCAATTCCTTGAAGA 1463396 29 96.6 32 ............................C AGTCGGCAATGTCTTCATCCTGTCCGCCTAAG 1463335 29 100.0 32 ............................. AAATAAAAACCAAGATGTTGCAGTTATCCAAA 1463274 29 100.0 33 ............................. ACCTGTTTTTTTCTGCAACATCTGAAAGAGATA 1463212 29 100.0 32 ............................. TAGATGAAAAGTATTTTGAAATAGCTAAGCAA 1463151 29 100.0 32 ............................. ATGCAAAAAAACACAATCAGTTAAGCAAGGTG 1463090 29 100.0 32 ............................. TTCTTTTGCGCTACTAGGCATTTACGAATGTT 1463029 29 100.0 32 ............................. ACAAAATGACACTTACTCGTTTTGGTAAAGAA 1462968 29 100.0 32 ............................. ACCACTTAGTTTTGTCAAAGCCTGCTCGATTG 1462907 29 96.6 32 ............................C TAGAACCAGATAGTGAAATGATAACCTCCCAA 1462846 29 100.0 32 ............................. CAACACGTGCTTGGGAATTGATTGGAAAAGCT 1462785 29 100.0 32 ............................. TTGTCTCAATACTTTATTTTTTAAGGATGAAG 1462724 29 100.0 32 ............................. TGTCCCATTTACCGTGCCAGCGGTAGGGATTA 1462663 29 100.0 32 ............................. CATGCAACGCTCGTGATTACCCGCCGATACAT 1462602 28 82.8 0 ..........-...A....T......T.A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AGTCTGGCAGAGTGTGTTGATGAAACATACCATTGCGATCTCGTGGCACTTGTACCTCAATTGATCCAAACTGGGTATCAATTTTACGGAAATACGCACCATTTCTAGAATTACCAGTATTCCAGCCATTTCTAGCATCAGGATCATAGCCTAAAAAGGCAGTCAGTTCAGATTCTAACAAGTCATTAACAGCTTGTTGGATTTCATGACGAAGCAAATCATTAATGTTATCTTGATTGAATAGAGCTTGAGTTATATTTTTGGTAAAATCATTCATGAAGGAGTTCTTCTTTCTGTATGTGTTTTTTGTTCAAACCAATCATACGAGAAAGGAACTCCTTTTTCTAATGTTTTAGGAAATTAAATTAAGGAATCCTTCATCCTTACACAAAATATTTTACGGTCTCATAAAAACATTTTGAATTATAATTAAAAATAAAACTATTGAAAAAATGAGTTTTTGATTTTTACAAAAGCCGGTATTATGGGATCTTTTTAGT # Right flank : AATAAATTAGCTAGATGCCTCAAATGAGGCATCTTTTTTGTTAGAAGGATTTTCTATGTAAGCGTTAAATGATAAAATAATAGGAGAGATTATAAAATGAAAAGAGAAAATAATGAGTTCTTTATCAAAAGCGGCTAAAAGTTTATGGGGCAAAAAGGCTATTAAAAATGGGCAAGAGCTTTGGCTGCCATTAATTGCTCACTTAATTGATACTAAAAATGTAATAAATTGGCTCTATAACCATTGGCTAAGTGATAAGGAACAACTAATTATTGAATCTTCTCTTCCAAATCAGAATATTCATGCTTTAGTAAAATTTCTTGGGTGTGTCCACGATTATGGTAAATGCATTCCTGCTTTTCAGGGAAAGCCTTCATATCAAAGATCTAAAGTTCTAGATCAGGATTTGCTAGAAAGATTGCTGCGACAAGGCTTAAGTAGCATTAAGTTAGTGTCGATGGAAAAATCACCTCATGCGGTAGCAGGGGAAGCTTTACTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //