Array 1 563867-565964 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009576.1 Listeria ivanovii subsp. londoniensis strain WSLC 30151 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 563867 29 100.0 37 ............................. TTTTTTGTGGACAATTTCCATTGGTGATTTGCCGAAG 563933 29 100.0 36 ............................. ATCGATACAAAGAAAATAAAAAGCATTCCGTATGTT 563998 29 100.0 37 ............................. TCAAGCCGGAAGCTGCTAGTACTTCCCCTGATTTCTC 564064 29 100.0 36 ............................. TTCATTGGCGCTAATATAAACGCAATTAATAAGACT 564129 29 100.0 37 ............................. TTTTTTAAGAACTCGGATAAAGGTTTTATGGAATTTG 564195 29 100.0 36 ............................. GTCATTTGAATCAAATTCGCATCTTCCATGATTCGG 564260 29 100.0 35 ............................. ATTGAAGAGCAATATGCTCCGGAAGAGGACTCTGG 564324 29 100.0 36 ............................. GTGATAAATGAACAAGTGAAAGCATCGGTGAAATTA 564389 29 100.0 34 ............................. TTTTCAGACTAAGACAGCGGATTTATATCATATT 564452 29 100.0 35 ............................. ATGAGTTAGAAAAGATGGGAATAAGAACAGAAATT 564516 29 100.0 35 ............................. ACATAACCTTCTAGTTGATAGTATTTTGTAACAAA 564580 29 100.0 34 ............................. AAAGAAATATGCGAGAATCTTTTGCAAATTCCTT 564643 29 100.0 35 ............................. AAAGGCTTTCCAGATTTATTCGGATTTCGCGGAAC 564707 29 100.0 36 ............................. AATTAAAAATGCTAACAAAAAACTTGCGGATATGCT 564772 29 100.0 36 ............................. AAGCTAACAATAGACATTGCGACCGCTAAAAAGACA 564837 29 100.0 36 ............................. ATAAACGAGGGGAAATAGGCAAGTAAACCCCATCAA 564902 29 100.0 35 ............................. GCGATACAAACGTTAGAAAAGTCAACGATTATTGC 564966 29 100.0 35 ............................. TTTACCTGACTGCCTACCGAAGTCCACTGCGCTGC 565030 29 100.0 36 ............................. GTCAAAGCCACTTAGCGCAATAATCTCCGGTGACTT 565095 29 100.0 37 ............................. ACCACATCCGTTTTAGTAGTTAATGCTGTTGTTGAAG 565161 29 100.0 37 ............................. ACTGGATATAAAGGTTCTTTCAAGCAAGAGAACATCA 565227 29 100.0 35 ............................. TTAGAAGGGGCAAAAATTGAAATTAGAAATTCGCA 565291 29 100.0 34 ............................. TTTATTAGTCCGCCAGTCATTGATACTAGTTTTC 565354 29 100.0 37 ............................. TCAACTATATGTTTAGTCACTTCGAACTTTTGATTAA 565420 29 100.0 35 ............................. GTTTTTAAAATAGCTACATTACTGCTACTAAGTTC 565484 29 100.0 34 ............................. GTCTGTATTGCTAGAAAAATAACTGCTCTTGATA 565547 29 100.0 34 ............................. TACCTTGCTGGGGAGCTGGATATATTGGCTTTTG 565610 29 100.0 37 ............................. TAAGTTAAATTGCTTTCAATTCGCAAATCTTTTAATT 565676 29 100.0 36 ............................. CCTCTCGTGAGTTCTATTTTTTGTCTCGCTACTTCG 565741 29 100.0 37 ............................. GAAGGATAAAATATTTTAAGAGTAGGTGAAATCCTAC 565807 29 100.0 35 ............................. AACGATTTGTGTCTTTATTTCGAAAAAGGAAATGA 565871 29 100.0 36 ............................. ACTGCAGTTGTTTTATAAGTTTTTACCTAGTCAATC 565936 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 33 29 100.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAAAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTGTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTGAGTTATTTGTTTATAGAATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTATGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATACATTGGGAGAGAATGAGAGTGGGAGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : TACTTCTGGAATATGTGGGAAGAAAGAACGAAGTCGACATTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTGAAAATGTGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGGAAATTCAATACATACCAAGAGACAGATGCGTTTTTCGATGTGTGAAAATGAAAGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGTTTGGAGTAAATTGAGAAATTGCAACAAAAAAACAAGGAACTAGTGCAAAATTAGTTTCTTGTTAGAGAGGGTGTCGGTTATTTTGAAGGATAGAAGTTTCTAGAGACTGCAGGTCAGTCATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCTTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGGCTTCAATCTCAGATACATTTTTAGATTCATAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 577463-579002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009576.1 Listeria ivanovii subsp. londoniensis strain WSLC 30151 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 577463 29 100.0 39 ............................. GTTGTTGTTGCATTCTTTTTAGTTTCATACTCTACTAGG 577531 29 100.0 37 ............................. AATTTATCCGCTATCTTGCGGGCTAGGGGCTGATACG 577597 29 100.0 36 ............................. GTTTTTTTGAATGACGAAGTTGAATATAAGCATATG 577662 29 100.0 37 ............................. ATATTATCAATTAACGCCATCACGATGGCAATTATCG 577728 29 100.0 36 ............................. AGATGTTTCCTTATTCTTCCACGCTTTTTCTTTCCG 577793 29 100.0 37 ............................. GAGGCTGAGAGCTTGGCATGACTATTTGGTGACATCG 577859 29 100.0 35 ............................. ATCATATGCTGGGTATGGTAGACTTCTCATCAGAG 577923 29 100.0 35 ............................. TTCTAACAGCGAACTGCTTAATTGCTTCCTGTTCG 577987 29 100.0 37 ............................. ACATTAGTACTCAGCTTCACTTATTTGAGTTACTTGG 578053 29 100.0 37 ............................. GGTATCAACGTTCGATAGAATGATTAGATACATTGCG 578119 29 100.0 38 ............................. AAGGTATGTCGGATGCCGCACAAGTGATTAACAGTAAG 578186 29 100.0 39 ............................. CGAGAAATGGGCTAGGTTCATGGAATATTGTAGACAAGG 578254 29 100.0 37 ............................. TTTCCTACTGCGCCGCTGTCACTTCCGCCATGCCCGG 578320 29 100.0 37 ............................. ACAGCTAATGCTTTTGTAAGCAAGTCTGCATTCCCTG 578386 29 100.0 36 ............................. TGCTTCTTTTGCGAACTTTCTGATGTATTTTTTTCG 578451 29 100.0 37 ............................. CCAATTGGCCTTCTTGTTCATTAATTGGAGAATACGG 578517 29 100.0 37 ............................. AGCTAATTTGGTACCGGGTTTGTACCATTTAATTTTG 578583 29 100.0 35 ............................. GCCAACCACGTACTTACTCCGGTTTCCATTTTCGG 578647 29 100.0 35 ............................. ACGAAACCAGCAAGTAAAACAAAAGAAAAAACAAG 578711 29 100.0 37 ............................. TCAGATGAGGAATTAAAACGTGCAGAAAACAGTAGCG 578777 29 100.0 36 ............................. GGAGATTGGTTCCGCAAGTATCGCATTTAGCTTTTG 578842 29 100.0 36 ............................. CGCAAAAGCGAGGGCATCAGAATTATTTAATTCGAG 578907 29 100.0 38 ............................. CAAGGATAATTTGCTATCTATATTCTGTGTATTTTTTG 578974 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 24 29 100.0 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTTAAAATTTGGTGGTGAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAGCTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGGTTTTTTCTGTCGCCCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGTGGAGAAGCTTTCTCGTATATCTTACTTAGTTAAAATAGGAAAACAAAACTAAATTTCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TTCTTACAAGAAAAGGATGAGCGAGAAGAGGCACTGCCACTAAAAAATGAGAATAAAAGAAAAACACTTTCGTTGGATTCATGTAAAATGAAATTAACGGAGGTGTTTTTTCATCATGTCCCACTTTTCTGAGCAGACTGATTTTATTTAAAAAATCAGTTTCTCAATAATTAGTGTATTCTCTTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAAGGAATAAATTTTCAAAATTAGCTAACTGGAGTAGTAGAAAACGGAAAAGTGGAAATATTTCGTTCTATTTTCATTGAAAACGAACAAAAAGGAGAGCTTAAGAATGAAAAAAATCGTACCAATCAGTTGTATTGTTGCAGTTTTAATGCTTCTAGCGAGTTGTGGTAGTGGAGATGCATCCAGTTCAAAAGTGGAGTTTTATACGGATAAGGGCGGAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //