Array 1 1395710-1385583 **** Predicted by CRISPRDetect 2.4 *** >NC_014220.1 Syntrophothermus lipocalidus DSM 12680, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1395709 30 100.0 37 .............................. AAATGACACAGACTTTTTGACCTGAGAATTTGATTCT 1395642 30 100.0 36 .............................. TTTGTTTCTTCCCACCTCCGAATTAAAGCCTGGGCA 1395576 30 100.0 43 .............................. CAAGGACGCGCAACAGAGCAAGCCCGGCTCGTGTGACTTGATG 1395503 30 100.0 37 .............................. CGGAGACCGGCACCGTGGACCATGGTAACGGATCTTA 1395436 30 100.0 36 .............................. CTCTTTCAGTCTCCTCTCTCTGGCCTAGGTTAGGAG 1395370 30 100.0 37 .............................. TTCTAATGCTGTCAAATCCGGCATAGTAGGCTGCCAG 1395303 30 100.0 36 .............................. TCTGATTGGCTTAACGTGCTTTGTTCGCTTAGTTTA 1395237 30 100.0 36 .............................. CCCTTTCGCATACATCGGTAATAAACCTGATAGCCA 1395171 30 100.0 36 .............................. CTATCTCGAATGGACAGGAGGAGAGGAGAGGAGGGG 1395105 30 100.0 36 .............................. CTCGAGCGAGTGAGCAGGAGGAGAGGAGAGGAGGGG 1395039 30 100.0 36 .............................. TTTTATGATCGTCTGCATATCGAGCAAACTGTAGAA 1394973 30 100.0 36 .............................. TGTCTTTTCGGCTTCCCTCTCAACCTCTGCATTTTT 1394907 30 100.0 36 .............................. TGACTTGCAGTTTTAGAATATCGCTTATTCTACGGC 1394841 30 100.0 37 .............................. CCAGCACAGGGAGAAACTGCTGTGGATTGTATTGGGC 1394774 30 100.0 36 .............................. GGTGTTGCAGGGGAAGAACCGCAAAGAACAGGAAGC 1394708 30 100.0 35 .............................. TCGTATACGACAATCTAAAAACAGCAGTTGCCCGG 1394643 30 100.0 37 .............................. GAGCTTCAGTATCTTTACGAACTCAAGGTTGGCTTTT 1394576 30 100.0 37 .............................. CACACCAAAAAGACCATCCAGGAGGTGTTCGAACAAG 1394509 30 100.0 36 .............................. TGCTATTCGGGCCCAGGACGTTCCCCCATAGCCAGA 1394443 30 100.0 36 .............................. ACTCTATATAACACTCAAGGCAGTAGCCGTCTTTTT 1394377 30 100.0 35 .............................. GAGCACGACAGGAGAAGCATCGCGACCCCCTTTAA 1394312 30 100.0 36 .............................. TTCTGCTCTGTACGCCGAATAAGCTAGGATTGCCAT 1394246 30 100.0 36 .............................. TTGAGGAAAAACCAAAGGGATTTGCGGGGCTAATGG 1394180 30 100.0 36 .............................. GGAGGATTATGACCAGGCCAAACAAAGATTACAGCC 1394114 30 100.0 35 .............................. TGCCGGGTACACATCAAAGGGTATGTGAACGAGGT 1394049 30 100.0 35 .............................. TCATCGGATATGAAGTAAAGATAAGGCCCAACAGA 1393984 30 100.0 36 .............................. CTCGCAGGTCGTCATCCATGAGGACCGCGTATGAGT 1393918 30 100.0 35 .............................. ATATTTTCTCCGAAGTTACACAGTTGGCCGAAAGA 1393853 30 100.0 37 .............................. TTCTTCGCCCATTCATAGCACCTCCCGGAACTTCTTG 1393786 30 100.0 36 .............................. GAAGTCTGACTTCCACCTTTAGTCCTCCCTTTCGCA 1393720 30 100.0 36 .............................. GGTTCACATTCATAATCGTGTAAGCAAAAAGCGCAG 1393654 30 100.0 36 .............................. TAAGCATAGTCTCTGTAATCCGGCGGCGAAGGAATA 1393588 30 100.0 36 .............................. CATTAAAAAGGTCACGGGAGCGAGCGAGGAGATGAG 1393522 30 100.0 36 .............................. TGTGATTGGTTTCCCTCCTTTCCTGCTAGCAAATAA 1393456 30 100.0 37 .............................. TGGGTATGCGAATGCTTCCGCCTATGCGGGTATGAGG 1393389 30 100.0 37 .............................. TAACGGGCATCCCAATATAGCTCGGTTATGCTTCTTG 1393322 30 100.0 38 .............................. AATCTTCGGTGATGAAAAAATGACCACGGCTCTTTTGG 1393254 30 100.0 39 .............................. GCAAGACTCACCTGGCAATAGCTCTGGGTATCTCAGCAG 1393185 30 100.0 36 .............................. TCGTCAATTTCGATTTCTAATTTCACTTTCCTCGAC 1393119 30 100.0 35 .............................. CATAAGAAGAATGAGCCCGTAGTTGCGGATATCGA 1393054 30 100.0 37 .............................. TAACGTCCTAGCTCCGACTTCGTGCGTGTGCTCGTGG 1392987 30 100.0 36 .............................. GCACAAGAAGGAAAGGGTGTCGTCTATTGCATCAAA 1392921 30 100.0 37 .............................. AGAAAACCATCCAGAAGGTAGAATTTCCCAGCTTCAG 1392854 30 100.0 36 .............................. GTGAATTCCTATTTACCTGGGCTGAGAGAGTGGGAA 1392788 30 100.0 36 .............................. CGTGTATGCGTGAGGGGCTTTAAGCCCCCGGCAAGG 1392722 30 100.0 36 .............................. TGAGCTACTCATCTTCACAGATGAAGAGGACGCCAG 1392656 30 100.0 36 .............................. TTTTGTTATTTGGGGGAGCTTCCTCCCCTCTTTCAG 1392590 30 100.0 37 .............................. CTGGTGATTACCAAAAATGGGCATTAGCCGCACGAAA 1392523 30 100.0 35 .............................. CCACAATCAGGGAGTGACCGCTACTGCCGCCCTGC 1392458 30 100.0 35 .............................. ACGTCGCCACCATGCTGGGATAGGGAATGGACGGA 1392393 30 100.0 36 .............................. TAGAAGTCGACAATCGCATCAAAAATATCTATACTC 1392327 30 100.0 39 .............................. ACTCGATGGAGTTTGCCTTGTTTCTCCGCTGGCAACTCC 1392258 30 100.0 36 .............................. CTGTAAAGTCATTTATAGCCCACTCCTGCCACAATA 1392192 30 100.0 34 .............................. GTACAAAGCAACGCCCGGAGGCACACCCGATCAA 1392128 30 100.0 37 .............................. GTTAGTAGCAAGAATCATGCCAACCAGAAATTGGTAA 1392061 30 100.0 36 .............................. ACGCGGCGTGTTATTATGATATCAGAAGCGCGGCGC 1391995 30 100.0 36 .............................. ATACGGCACTGTAAGCGTCATACAGTGCCATTCTGC 1391929 30 100.0 36 .............................. TCAACCAGTCCTCTGTAGTACTGGCCTATCTTCCAA 1391863 30 100.0 35 .............................. AGTCGATACTGTATCTAATTTCGCGGTTCACCGCT 1391798 30 100.0 37 .............................. CGCTGTGGTCAAAGAATACTGGGAAGCTCCATCTTTG 1391731 30 100.0 36 .............................. GGAAGCGAGGATCACGAAAAAGACGGTAGTAAGTGT 1391665 30 100.0 35 .............................. TTAACTAGTTGCGCTTTACCTTCATCAATATATCG 1391600 30 100.0 36 .............................. GCATCAAAAGTCGCCTCCTCTACAGAAGTGGATACG 1391534 30 100.0 37 .............................. ACGGCACAATGGAAATTAATCGTGCGCGTGGTACTGC 1391467 30 100.0 36 .............................. GTAATCTTGGATTTGATAGTATGTGTCTACTAGATA 1391401 30 100.0 37 .............................. TAGCTGCTATTTGCACCGCTTCTCTTTTCATGTCTTC 1391334 30 100.0 35 .............................. ATGGCAGTGGTGGGAAAGTAAAATACTGCGGCGGA 1391269 30 100.0 37 .............................. CACACCTCGCATGTATGACTGCCCCTGCCCTTCTTGG 1391202 30 100.0 37 .............................. TTTGTCCAAGCAAACATAAATTGGTCTGAAATTCATC 1391135 30 100.0 36 .............................. CGCCTGCTTCACCCTTCCTAAACCAGCTCAGGAAAG 1391069 30 100.0 36 .............................. ATTTTCGGCGTTCTTTTTTTTTGCTGGGACGAATTT 1391003 30 100.0 37 .............................. TTCCAGTCCAGGTCGCTGGGACGGCACCAGCTGTCAT 1390936 30 100.0 36 .............................. CTTCAAGATAGCGGACTTCCGCCACATCGAAGCCGG 1390870 30 100.0 37 .............................. GGCTGTTCTTTTTGCTTACTGAGGGATTCAATTCTGG 1390803 30 100.0 41 .............................. CTCTGGACTGTATAGAAGTATGTCCTCGTCAAGGAGGACGT 1390732 30 100.0 35 .............................. GCGGCAAGCAAGGTAACTTCCTTGCTTTCTCGTAT 1390667 30 100.0 37 .............................. CGTAGCCGCTGGCGTTCAGGCAGACCATGGCCCCGGC 1390600 30 100.0 42 .............................. GAACTTCGCTTCCACCAGGGTGGCGGTCTGTGCCGCCAGGGG 1390528 30 100.0 35 .............................. CGCAACGTCAAGGCCATCATCGCGGCTCTGAAAGC 1390463 30 100.0 37 .............................. GGAGAATACCATGAAACTGGCGAAGGAGTTCCAGGGG 1390396 30 100.0 37 .............................. GGTCCTGTCCGACGGCGACCCGAGGACGGCCCAGGGC 1390329 30 100.0 35 .............................. CAGCGGTGGACGACGTGCAGGCTCTAGTCAACAAG 1390264 30 100.0 35 .............................. GCGCTACTTCCTGCGCTGGAACGAGCTGGCCCTGG 1390199 30 100.0 37 .............................. GAGTGTGCCTTACCAGCCCGCCCTCCCCCGCGGCAAA 1390132 30 100.0 35 .............................. ATTCAACTGTCCAGAATGTAAAGCCCATAAACTAA 1390067 30 100.0 37 .............................. CTTCAGACAGAAGCTCTTTGACGCAGTTTCTTTTGTG 1390000 30 100.0 36 .............................. CGGAGCGCTGTATGAAAACGGCCGTAAAACCTATGA 1389934 30 100.0 37 .............................. TGGGGAAAGGTTGCCGGCCCGTGGCCAGTGTTACCTG 1389867 30 100.0 36 .............................. TAAAACAAACTCAGGAGATCCCTTATCCGGTGTTCG 1389801 30 100.0 35 .............................. TATCTTTTTTTCAAGAGAATAGTCCCAGTGGGAAG 1389736 30 100.0 36 .............................. TGCTTTCTCATAAATCCAGCGCTGGACATGCTCCAT 1389670 30 100.0 36 .............................. TGGCTGTTTTAACGGCTCTGGGGCTTTATGTGTTCG 1389604 30 100.0 36 .............................. TAACCTAGCTAGATACATTCCTTTTTATATATTTAT 1389538 30 100.0 37 .............................. CCGTAAGCAGCTACCTTCTCGCTTGTTTCAGGCAGAG 1389471 30 100.0 38 .............................. TAAACTTAAGTGCTGAAGAAGTAGCAGGGATTGTTGCA 1389403 30 100.0 37 .............................. TTTGACTTGGTTCGGGTGCAAGATGGGCTGGTGTTGC 1389336 30 100.0 37 .............................. CTACCTGGCATATAAGAAAATAGTTGCACAGTACAAA 1389269 30 100.0 37 .............................. GTGGATGTATGTAGTCCGGTTCTCCTCCGAGCCGGAC 1389202 30 100.0 42 .............................. GCCGCGCAGGAGGGGAAACAGGTAGATGTCTACCTGCCGGGC 1389130 30 100.0 34 .............................. GGGTCAGGTCGGCATTGATGTCGGCCTTAACTAC 1389066 30 100.0 36 .............................. ACGGCAAGCCTCGCTGCGTGGTCAAGGTGGACGACG 1389000 30 100.0 36 .............................. TGCTGACCGCCTTGGGAACCCCCAGGTTGCGCCTGG 1388934 30 100.0 37 .............................. GGTCCAGACTGGGAATTAGGGTATCCCGAAAGAATTT 1388867 30 100.0 36 .............................. GAGCCCTGCCAGGGAATCTGTGCCACACAGGCCGGG 1388801 30 100.0 37 .............................. CGACTTGGGGCTTAGCTTTTTGTCTAGTTATATCGAG 1388734 30 100.0 41 .............................. ATGGTACCGTCCTAGCGACCTAGACTGGGGGCACGAATATG 1388663 30 100.0 39 .............................. ATTGTTGAGAGCCTATCATACCAGCTTTATAGTTTTCAT 1388594 30 100.0 37 .............................. GACCCCGTCCGGGAGTGGCTGGAGAATGCTGGGTTTG 1388527 30 100.0 42 .............................. CGGGGAAGATAATTAACAGCGAGGAGTTAGAGGAAATATTAG 1388455 30 100.0 36 .............................. CCGTTTTCATTAGACGATCGTCTTTGCTCATTTCCA 1388389 30 100.0 36 .............................. GGGTGGTAGGAAAAGGATGCAAGGAGCGTGAAGTCT 1388323 30 100.0 36 .............................. CGCCGGGCTTCGCAAGACGAAGCCTTGGCAAAATCT 1388257 30 100.0 37 .............................. GGGGATTGACTTCTGTGGCTACCGGATATGGCCCACT 1388190 30 100.0 36 .............................. CTTTCAGACTCCCAGTCTAGCAGTCTAGCAGTCTAG 1388124 30 100.0 36 .............................. CTTTTGGAGCGGCGCTATATCTCGGACAGTTACGCC 1388058 30 100.0 37 .............................. CATACCACCTGCTGGAGCCCCGAAAAAAGCTGGAATA 1387991 30 100.0 36 .............................. GTTTTCTCCCACCATGAGAGAAAAGTTTTAATCTTG 1387925 30 100.0 35 .............................. AGGGTCAATAACGAGCAAAAGAAGGTCTCCGTTAA 1387860 30 100.0 36 .............................. TGGGCTGAAAACTGGAAAGAATATTGCCGGGACAGC 1387794 30 100.0 37 .............................. GGGCTTAGTGCCCCGGCTTTTTTATTTTTTTTCTTGA 1387727 30 100.0 35 .............................. GGTGGCGTTAGCCCGGCAGGAGGCTAAGATAGACG 1387662 30 100.0 32 .............................. CCATCGTATCCTCCGTAATGAGGATGTTCACG 1387600 30 100.0 38 .............................. GAATCTTGGGCGAGAGAAAACGCATTTGGGCGTACAGG 1387532 30 100.0 35 .............................. CTAGCATAAGGGGCGCTGTTCATGGCCGAGCTTTT 1387467 30 100.0 36 .............................. TGAGACCTGCGTATACGTCCAATTCCTCCTGAGACA 1387401 30 100.0 38 .............................. ATAGAGCTCGGTTATGCTTCTTGTGGTCTTGACCTCAA 1387333 30 100.0 35 .............................. CTATCTGCGGGCTGGCTCTGTCAAGTTCCTGCTCC 1387268 30 100.0 36 .............................. AGCAGCCTCCCTGGTACTTACACCTTCTTCTTTGCA 1387202 30 100.0 35 .............................. TATACGGAACGCCCAACTCATTTGCCGCGTCGGTA 1387137 30 100.0 36 .............................. TGGAAGAAGGTAATAAAGATGACTGAGCGGGACTGG 1387071 30 100.0 36 .............................. GGCTGAAGATAATCTGTTCATCCATGATTGGGATGA 1387005 30 100.0 35 .............................. TGAGGCTACCCAGGAAACTGGTAACAGTTTCCTGG 1386940 30 100.0 37 .............................. GCGTTCATAGTTTTAATGATGTAACTGCCAACCTCGG 1386873 30 100.0 37 .............................. GAGTGCGCCCGGCCTGGACGGTCCCCACCAAGGTAAC 1386806 30 100.0 36 .............................. CATATCCTCCAGACTTTCCCGGTAGGTAGCATTTAT 1386740 30 100.0 36 .............................. AGTAACAATGCTGATTTTCTAGTATGGATTGCTGGG 1386674 30 100.0 35 .............................. GTTGCCTAAGAACCGTTACCATGGTCCGCGATGCC 1386609 30 100.0 36 .............................. GTATAACTCCGCATTTTTAGCCGGACCTTATCTCCG 1386543 30 100.0 36 .............................. TATTTTTGAGCTATTGGAGGCTTTGCCGGAAGGCAG 1386477 30 100.0 36 .............................. GAGGAATTGGGAGTGGGGCACAGACGAGCGGGGCCA 1386411 30 100.0 37 .............................. ATAAGGGGATACACTACTATGGCCGCAGGACTAATAA 1386344 30 100.0 35 .............................. GTGGCAGAGCAGGTTCGGAATTGCGAGCCTTTTGT 1386279 30 100.0 37 .............................. TACAAAGCGAAGTTTCGACCGCTCGCGGAGGGTACGC 1386212 30 100.0 36 .............................. CTGGGCTATTGAAGATATTAAGTGGGTAAAGGAAAA 1386146 30 100.0 37 .............................. TTTGGAGTGGGACAGGCAGGGTTTCGAGAGGATGGGG 1386079 30 100.0 37 .............................. TGTCAGCATCTCCTGGCGGTGCTCGCGGTTTAACTGC 1386012 30 100.0 37 .............................. TTTAACAGTTGTTCCTTGATGGTGCTTTTCCGCTCCG 1385945 30 100.0 36 .............................. TAACTAAACTGCGCTGCAGCTCAGGGAAAGTGCGGC 1385879 30 100.0 38 .............................. CAGGAACGCTGGTCCTGGTCCTATACCTGGACACAAGG 1385811 30 100.0 35 .............................. TATATCTCAAACTTATCTTTGGCCCGCCAGGTTTC 1385746 30 96.7 37 .......................C...... ACGTACTGCGTCACTGCTTCGCTACAAGGCTCTTGGA 1385679 30 100.0 37 .............................. ATGTCGTTCTCGTTCCGCGGTTGCGATTTAGAGGTAA 1385612 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 153 30 100.0 36 GATCCAATCGAACCATAGTGGGATTGAAAC # Left flank : TGGTGGAGGATAACCTGAGGCGTAAAGCAGTCGCACTAGGATTATCAGTTGTGCATACGGATGAAATGAAGTTTGAGGTTATTGGAAACTGGAAATCCCGGCTTTTCGAAGCTCAAGGCACCTGGGTTCGTGGATATGAAGGAAGTTTTATCATCATGGGAGCAGAAAAACTGTTCGCACTCGCGTACGAGGCTGGCCTGGGGGAACGTAACAGCCAGGGATTTGGCATGTTCCGAGTTGTTGAGCAGAAAGGCAAGGAGGGAACGAAGCAGGGTAAGAAGTGTTAAATCGTATGTGGAGATGTGGTATAATTGCAGTCGATCGAACATGCTTTGAGGCAAACGAAGGTGAGACTTAAAGTTGCCTAACGTGAAAGTGCCGTAGACATGGTAAATTTGGCCTTTGACATGTGCAGTCGATCTCCTGGCACAAACCGGTGATCGGGGATCGACTGCAGGAACAATCGGAGCAACGCTTAAAAAATGCGGGTTTTTGGCTTG # Right flank : GGAAATGTCACTCGGGGAAGTTACCAAATGGCGTTAGATCCAATCGTGTTACAGTCCATTTAAAATGACCGAAAGCTGATGGAATTGCCTGTCCTGGAATTGCTAGATATAATGGCCATAGCTTGAAGAAAGGAAAGACGTCCCTGTTTGATGTGCTTCTGGAGCAAACAGAAGCACCAGGAACGTCCCCAGAAAAGCATGGTCATTATATCAAAATATCAGCTAATAAAGAAGCCTGAAAAGGGAGTTTTTTGTCAGGAGCGAGGAGCAGGTTTTTTGTCCGTGTTGTAAAGGGCGGTTGAAGGTAATCGGCAGCAGGGAACGAAAGTATGTTAACGCTCAAGGGCAAAAGATTTGTCTGGTCATCCGCAGAATGCGATGTGCCGATTGTAAACGGATCCATCACGAACTTCCATATCTTGTCTTTGTCAATCGAAAAGTTGACCCCCGTGCTCGTGAAAAAGTTGACCACCTGAGGTAAAAAAATAATACGAGTTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCCAATCGAACCATAGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1605567-1597645 **** Predicted by CRISPRDetect 2.4 *** >NC_014220.1 Syntrophothermus lipocalidus DSM 12680, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1605566 32 100.0 35 ................................ TTGCGAAATTTTGCCTCGACAACCTGTCTATCGCG 1605499 32 100.0 34 ................................ AGACGCTCATTGTTGTATGTGATGATGTAATCAA 1605433 32 100.0 34 ................................ AAGAAGCAACTACTGACACCGAATTTGATAAATA 1605367 32 100.0 37 ................................ ACTGGACAGCTAACACAGGGAGGGGCGCAAATGCCGT 1605298 32 100.0 33 ................................ CCTTGACTGGGGTGGTTATAGCGAAGCGATGAT 1605233 32 100.0 35 ................................ ACGAAGAAATTAAGAAACAGGTACAAGATCACGAG 1605166 32 100.0 36 ................................ TTTGAATTACGGCGCAAAGAAGGCTACTAGAAGTGG 1605098 32 100.0 34 ................................ AACTTGTGTTTTGGACTCCTATTGGTTAACCAAC 1605032 32 100.0 35 ................................ GCACAACGGATAATCGTCTCTACTATCATCGTAAG 1604965 32 100.0 34 ................................ ACTCTCAAAAGGTGGTACCCTCATTGGGAATGGT 1604899 32 100.0 34 ................................ TTTTTATCAAACCATATCATCCGGCTTCCACAGG 1604833 32 100.0 34 ................................ TCGGGCTTGACCCGTATAAATCGCCCTTTGACGT 1604767 32 100.0 35 ................................ GCCCCCGGTTTTTTGTTGCGATTTACGGGAGGTGG 1604700 32 100.0 34 ................................ TTTTGTAGGACTTCTCTCACCTTCTTTTCTATCC 1604634 32 100.0 34 ................................ ATTACATCACAGGAAGGAGGTGACGGAAATGTGG 1604568 32 100.0 34 ................................ ATTAGGAAATGCCTACAATGTAGAAGTACCAAAG 1604502 32 100.0 33 ................................ ATGCCTGCGGTTACAACTTGCGTATGACAAGGT 1604437 32 100.0 34 ................................ CTGAGAACGTCGAATGTGGGCTACAAGCTGAAAT 1604371 32 100.0 36 ................................ AGTGGGCCTATGCGTTACGTGTATCTGCCCATTGAT 1604303 32 100.0 34 ................................ ACGAGGAACTACAACCTTGAGAGTGACCTTCGGA 1604237 32 100.0 34 ................................ AGCGTACCAAGCCTGAAGAATTTAACTTGCCCAA 1604171 32 100.0 34 ................................ TTCATGGTTCATTCCTCCTTTTTATTTAAACGCC 1604105 32 100.0 35 ................................ ACGCATACGAACCGCACTTGACTCCTTCAAGGTGC 1604038 32 100.0 34 ................................ ATCCACTTACCGCGCTGGGTCATTCTCGCGGCCG 1603972 32 100.0 33 ................................ AGCGCGAGGTAGCCAAAGCCGAGCAGGAATTGG 1603907 32 100.0 35 ................................ GTCTCTTAGTGTCGCTATGGTGTCTAGCTAGTGCA 1603840 32 100.0 35 ................................ TCACCCCTCCCGCTTTTGTCTTAATCTCCAATCCC 1603773 32 100.0 34 ................................ TACTGGCAACTTTTTTATGTGAGTGCCCGACTAT 1603707 32 100.0 34 ................................ ATCGTTTTTCCAGCGCAAATCTGCTTCAAGTTTC 1603641 32 100.0 35 ................................ AGTTATGCGAATGGAACGCTTACTTTTGCGTCTGC 1603574 32 100.0 38 ................................ TGGGGAGGACGAGAGTAGTGGCGCAATATAAACTCGAA 1603504 32 100.0 35 ................................ TGCAATTACTCTTACAGGAACCATTAACCTACCGT 1603437 32 100.0 33 ................................ TTTAACCCAAGCCCGAAGACTATTATGGTTAAT 1603372 32 100.0 33 ................................ ACGAGATAATGCGACCTACCACAAATTAGTGAG 1603307 32 100.0 34 ................................ AAGAATGTCCTGACCTTGTTCGTATGAACGAGGG 1603241 32 100.0 34 ................................ TTTATTGACAGCAAAATCATCATAGCCGCCGTAA 1603175 32 100.0 33 ................................ TCTGGCTTGCATCCCCAATCTAACATTTTGAAA 1603110 32 100.0 34 ................................ CAATAGTCAAATACGTCTCCCGCGCATAGGATTG 1603044 32 100.0 35 ................................ TTCTGCTTCTTCAACCCGCTCTAACTTTTCCTCCA 1602977 32 100.0 34 ................................ TTCCCAATCATGGGAAAAAACTTTCCAAAAATGG 1602911 32 100.0 36 ................................ CACGACCCGGAAGCCCGCTTAAATAAACAGTTTGCC 1602843 32 100.0 33 ................................ AGTGCCTTTAAGCATCTGTTCTCTTTCGCCAAC 1602778 32 100.0 34 ................................ TTGTCAAAACAATAACCCCGAATCCCCAACAAAT 1602712 32 100.0 35 ................................ GAAACTAACCTGCCTTGCCTGCCCAATCCGATTAA 1602645 32 100.0 34 ................................ ACTGCCGAGAATGGACTGGACAGGGATAAAAAAC 1602579 32 100.0 35 ................................ GAATCAAGTAATGTCGCAGATACTACAACAGGGCG 1602512 32 100.0 31 ................................ CGGCATCCTACTACAAACGGGGATTGACTTG 1602449 32 100.0 34 ................................ CTGTTTACGATTCACAAGGAAATCTGCTTGGAAC 1602383 32 100.0 33 ................................ TCATTCCAGACCTCTCCTTTCCCTGTTTTGGAG 1602318 32 100.0 33 ................................ ATCAACATCAACTCCTAGATATGCCTCTCCTAT 1602253 32 100.0 35 ................................ TTTTTGTTACCTAATGGAATTGCGAGAGGAAACTG 1602186 32 100.0 33 ................................ CACTGTAAAAGGAATTGGCGGACGTTTAATGGG 1602121 32 100.0 34 ................................ AGGTTAATGGACAGAGATTCTCAAATTGCAGTAG 1602055 32 100.0 34 ................................ AGAAGTAAAATTGCTTCTGAACAACATCTAGGAC 1601989 32 100.0 34 ................................ CTGTTTCTCATTAACGACGCCGAGGACGACATAA 1601923 32 100.0 34 ................................ CCGTTTGAATAAACTCCACCAATAACTATTTCAT 1601857 32 100.0 35 ................................ TGCAATTACTCTTACAGGAACCATTAACCTACCGT 1601790 32 100.0 34 ................................ GGCAGTATGCAATTGAGCGTTACAATGAGTCCAA 1601724 32 100.0 34 ................................ TTTGGCGTAGCACCTCAACTCCTCTGCTGACAAG 1601658 32 100.0 34 ................................ GGGGGACATTATCAATCGTTCATGGTCCTTCCGG 1601592 32 100.0 34 ................................ TATTGGCTTCCTAAGCCAATCAATATATTGTTTA 1601526 32 100.0 34 ................................ ATTCTCATTAAAGCTCCAATACAAAGTTGTTTTG 1601460 32 100.0 34 ................................ GATATGGCTGTATCTGTAGCTACAGGTACGTCGT 1601394 32 100.0 34 ................................ TTGCTTCAGTAGCGGTAACACCGACTTTAGCCAA 1601328 32 100.0 34 ................................ TTTATTCCCCTGTGCGGTTCTATCGTGGTAGTTT 1601262 32 100.0 35 ................................ AAATTGTATAATAATATCAGAGAGGAAAGTTAATA 1601195 32 100.0 33 ................................ GGGAACTTGGTCAACGAAGAAAGAAAGAAGAAC 1601130 32 100.0 34 ................................ ATTGAGGGGATACACGGACCCCCTCGTGGTATAA 1601064 32 100.0 34 ................................ TTGCGTTTCTTGCGGTTTGTATAAATATGTAGAA 1600998 32 100.0 35 ................................ GGGTCTAGTGGGGCGTACGCAGTAGCCTCGTATAC 1600931 32 100.0 34 ................................ CTGGCCTTCTTCGTCCTTACAACGGAACCTTGGA 1600865 32 100.0 34 ................................ CTGAAGCAGAAGTTGAAAAAGGAACTATCTATGG 1600799 32 100.0 35 ................................ CACCTGGGGATAAACCTATATCAACCAACGGCATC 1600732 32 100.0 34 ................................ TGTATTAGCTCAGCTTCTGCTCGCAAAGATTTCT 1600666 32 100.0 35 ................................ TCTTTTCTTGGAATTCTTCCTCAATCTCGTTCCAA 1600599 32 100.0 34 ................................ GCTTTCACCGCACCTTTCATATTCTCCAAACCAG 1600533 32 100.0 34 ................................ ACCTTTCCCATGGTGTAGAATATGGAATCTGGTT 1600467 32 100.0 35 ................................ TAGAATCCCCTGAATTGAAAATCGTTGCGGGCTGG 1600400 32 100.0 35 ................................ GGGCTTCCAGCTAATTATGTTGAGGTGGAGGCGTG 1600333 32 100.0 34 ................................ TTCGAGGCGGGCGATATGACCGAGGAACAGGTAT 1600267 32 100.0 33 ................................ GTTCCATAATCTTTATATTGCTTCAATTTAATT 1600202 32 100.0 35 ................................ AATTGTTCCTGAAGGGTTATATCAAATTGCAGTTG 1600135 32 100.0 33 ................................ TTGTGGTGTGCATCCCCAATCTAACATTTTGAA 1600070 32 100.0 34 ................................ TGAAAGTTTAACCCCATAGCCCCAGCTTGATATT 1600004 32 100.0 35 ................................ AAACTTGAAAAACCTGTCATAACGGTATCACCTGA 1599937 32 100.0 33 ................................ GTCCTAAAACTTTCCTTGCCCAGGTCGTCCCAG 1599872 32 100.0 37 ................................ ATAATTTTTTTAACCCTAAAAGTTCAAGAAATTGAAA 1599803 32 100.0 36 ................................ CGTGTTGCCTTTATGCTCATGTACTGGCTTGGCCTG 1599735 32 100.0 35 ................................ TTGTAGTAGTCTATCTTTGTGTGTAACAGGGCCGT 1599668 32 100.0 35 ................................ CAGAGTGTCAGCAAGAATAAAGCCGGCCGCGTCGG 1599601 32 100.0 33 ................................ GCGAAGGTTATAGTCATCAGCCACGTCGAGGAG 1599536 32 100.0 34 ................................ GATTGAGGGCGGTTATTAAGCGGGCTAAGTCAAG 1599470 32 100.0 33 ................................ ACTTGAGGGCGGATTGGACAATTTGCAATGCAA 1599405 32 100.0 34 ................................ TGGCGGTTTATCAGGAACATCGCCGGAAATTAGA 1599339 32 100.0 36 ................................ CTGGGGCCATAGGATTTATGAGTGGGAGCTGCTGGA 1599271 32 100.0 36 ................................ AGCTAATACAAACGCCCAGGCAGGAAGACAAACGGC 1599203 32 100.0 34 ................................ GCGGTTGACCCTAAAAACCCACGCGTTGAAGTGG 1599137 32 100.0 33 ................................ TCTTTCCTCCCGGACATGGAGCATGACAATCCG 1599072 32 100.0 36 ................................ GGGACCCTTGTGGTGCACTAAGGAGGTGGCATAGAT 1599004 32 100.0 35 ................................ ATGATGCTCTGCTATAAAGTCCGGTGGAGGCGGTA 1598937 32 100.0 33 ................................ ATCATCCCATCGTCCCTGGTTGAGCCAGGTTGT 1598872 32 100.0 34 ................................ AAGCTGCAGGATGGCCGGGTAATAACCCTCCGCA 1598806 32 100.0 34 ................................ GACATTGACCTGTGCACTCTCGTGCTCTGGGAAA 1598740 32 100.0 34 ................................ AGTTGGTTTATTATTGGAAGCCTTTAATTCAACT 1598674 32 100.0 35 ................................ TGTGTGCCCAGCATGATAAAGTCGGCCAGCACCGT 1598607 32 100.0 33 ................................ CTTTTCCTCCCTTTTTATTATAGTCCACAATCC 1598542 32 100.0 33 ................................ TTTTCGCAAGGTAGCCCATAAAGCCTTATACGG 1598477 32 100.0 34 ................................ ATCACAGCCAAAGCGCCTTCTCCCTGGCAGGAGG 1598411 32 100.0 38 ................................ AGGTAAAATATCAATCCAGTTACATTCCCACGTTGTTT 1598341 32 100.0 35 ................................ TTTTGAGGGGTTCTTCCCCGGGGAAGCAAGGAAGG 1598274 32 100.0 34 ................................ ATCACCGCTATGTCGAACGCCACGCCCCAGCAGT 1598208 32 100.0 34 ................................ GTCTTGGTCGAGGGCCTCGACTTGGGGCTTAGCA 1598142 32 100.0 35 ................................ CCGAGCCAACCCGTAATCGACCCCGACTCCGCCTC 1598075 32 100.0 35 ................................ ACGTGAAACATTTTGCGCTCCAGCCGCGGAGCTCC 1598008 32 100.0 35 ................................ GTGTTTTTGACGGTTCTTAAATTATATCTCGCTAG 1597941 32 100.0 33 ................................ ACGTCTTTCAGCTTTATATGCCCTATCGCTGGC 1597876 32 100.0 34 ................................ ATCCATCTCGCCTATAGCAACAATTGATGTCGGC 1597810 32 100.0 35 ................................ AACAGCTTGGTAATCTACACAGCTACCCATCCTGA 1597743 32 100.0 35 ................................ AGCCTTGTAATCTGTTGCATTACCGCTTGCAGTGC 1597676 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 120 32 100.0 34 GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Left flank : CTGAAACGCCAGAAGGCAAGAAGAGGTTGCGGTTAGTTGCAAAAGAATGCGAAAATGTCGGACAGCGGGTTCAAAAATCGGTTTTTGAATGCCTAGTGGATCCGGCACAATTTGTAGCATTAAAACACCGTCTGGAAAAGATCATTGACAAAGAGCACGATAGTTTAAGGTACTACCGGCTGGGCGCTAACTGGCAACGACGGGTGGAGCACGTAGGAGCGAATCCGGGCTACGATCCAGAAGGGTTTTTGCACATCTAAAACGCTTCTAACTGGTTGCACTTCGGTTAGCATCAATTGGTCAGGCAAGAATGGCTTTGCACACTCCAAGAGCGCGAACCTATAGTGGTGGCTGTTTGCCTGGGAGGTTCGCGATGCGGAAGGTTGCGGTATTCTTAGCGTGGGACTGCTGTAATAAACGGATAAGCCGTACCTGAGCGCGGCTGGGGCGCGGAACCGCAGCCAGAAAGAGCCGAACGAATGGCAGCAATGGGCAATACA # Right flank : GACTCGGGTCCCCGGCACCAGAAAATAAAGGCCCCGCCCAGGTTGGCGGGTTTTTTACTTTGGTGCACTAGTTTTTCACCAAATCTGCACGCATATCTTCGCGACACACAGCGGTGTCGCCACTAGAGAACGATAACCTCATTACTAACGAAGACCGAGAAGTTTTTGAGTAAGACATCATCTGTGTTTATCAGTGTTAATCTGTGTTAATCTGTGGCTATTTTTCGGGGCAGAGGAAATTGAAAAAGTCGGGCTAGGCATTAAGCTCTTTGTACGACGTTCTTGCGTTGTTTTCCCATTTATAGGTATCGCTTATAGCAGCTTCTCAAGTTCTTCTGGTGATAAACGGGCACTCTTCAAAATAGACTTAATAACTTTAGGCGATAGCGTCTCTTTGCCATGTACAGGCACTGTGGCCCAGCGGGTTCGGTCCTTTGGGTGGCTAAGAAAATGATGACTGCCTTGAACGCGTGTAATTACGAACCCGCTCCGCTGTAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //