Array 1 16365-17591 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEH01000002.1 Clostridium sp. AF32-12BH AF32-12BH.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 16365 33 97.0 33 G................................ TCAATCATGGCATTGTGTGCGTATGGCTTGAAA 16431 33 97.0 34 T................................ CTCTTGGGCGACTTTGGAAGTGTAGGAGGGAGAC 16498 33 100.0 32 ................................. GTCTTTCAGATATGCCACATTTCAAGCCATAC 16563 33 97.0 33 G................................ CTTTGCCAGACGGTCTAATCTGTGTCGCTATAA 16629 33 97.0 33 T................................ AGCTCCGCAAGCACTTCTTCCCGGTTTCGATAC 16695 33 100.0 32 ................................. TGATAGCCACGCATATAGACAAGGGGCATATA 16760 33 97.0 34 C................................ TGCCCCTGTGATATAATATCTAGCGTTGTCGCGC 16827 33 97.0 34 C................................ ATACAAAGACATCAAAAAACTGATGGCTGATCTG 16894 33 100.0 35 ................................. TGGCAACAGAAAGGGGGTGTGTCTACGTGTCAGAA 16962 33 100.0 32 ................................. AAGAAGATAGCAAACAAGCAAGTAGACCATTT 17027 33 97.0 33 T................................ CAAGCTGTTTCAGACTTTCAATAACCGGGGCAA 17093 33 97.0 32 G................................ TTCCCGCTCTCCTGCACCCTCTCCTGCAACTT 17158 33 97.0 35 C................................ TGCCTCCAATGCAATAGAATTTGAAAAAAGTCCAT 17226 33 97.0 35 T................................ GTCTGCGTCAGCGGCACAGGATCACCCAGGCTCTC 17294 33 100.0 34 ................................. GATACATAAAGTTTAATAAATAAAGGAGATCATT 17361 33 97.0 33 ............T.................... GTCAATAAAGAATATAGTTTCACGCGCTGAATC 17427 33 97.0 32 G................................ CGTACATGCCGATGATTACAGGCAGCTTTATC 17492 33 100.0 34 ................................. GTTTCAGCATCCGCAAGGCGGCTTTCCTGACCTT 17559 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= =================================== ================== 19 33 97.9 33 AGTCGCTTCCCTCGCGGAAGCGTGGATTGAAAT # Left flank : TTTTAAACGGTTTTCCACAGAGCGTGTCATGAAATCATTGGCAGGTGAGTTGACTGAAAATGAAAAGTGGTCTATAAAAGGAACTCTGATGGGAGAGTGTTGGTATAAGAACTGCTGCGTATCAGATCATAAAGACCACTTTAGATGCGGGAAACCGGAACTTGAATCTGGAAACAAAAAAGTGACAGCATTAATTCTGTCAGAAGTTGTACAGCAGATTTTGAAAACGATATGATTTCGGAGTGGAGTATTGATTAATGATTACTTCATAATAAAATATGTTTTCATTATCAAATCTTAGGCAATTGTGGAAAGCATGTATGCATGTCATTGAATATGAGGTGCGAGTCGCAAGTACACATAAAAATACGTGTGGATTCGCACGTCTTCCAATAAGAATATTTTATTTGCTTGACGATATGAAAAAGAAATATTATTATTAGTTTGTAAGTCGTGCTATGATTTTTGCAGATATGCACGAGAAAATTGTACACATTTGC # Right flank : TAAGCTAGAATACCGGAGCTGTCATAAGTATGAGGCTCGCTTTCCTCACGTAAGCACAAATTCCAGAAATATCCAGTATCTTAAATACCTGGCATTTTTATAGTACACCTATACAATTATAATGTAACACAACAAGAACATTATATGAGGAGGGTGTATATGGCAGAATTATATTTTACAATTTCTGGCTGTAAACATTATTACGGTACGGATTTTATGGAGAAGGGCATGAAAGTCCAACTCGTAAAAGAACCGGACAATGAATTTGACAAAGAAGCCATTCAGGTGATGGTAAAAGGTCTCGGAAAATGTGGTTATGTGGCGAATAGTCCTTATACCGTAAAGGGGGAATCCATGAGTGCCGGAAGATTGTATGATAAGATTGGAGATACGGCAAAGGGAAAGATTTTGTTTGTTTTGGATCAGGGTGTGTTATGTAAGATCACAGATACAGGAATAAAAAGTGAAGAATAGAGAAGGTGTTTGTTTCGTTGCGCATT # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGCTTCCCTCGCGGAAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 25865-30786 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUEH01000002.1 Clostridium sp. AF32-12BH AF32-12BH.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 25865 31 100.0 33 ............................... TCGAAGCTATGTATATACGACTCCGAATCCACC 25929 31 100.0 34 ............................... TACAAGGGAAGATGTAAAGGACGCATTGAAAGCC 25994 31 100.0 35 ............................... GGCTGATGAATGAAAGAGGGTACGGAGTGGACTGG 26060 31 100.0 34 ............................... AATCCCCCTTTGAGTGACCGCAGATATGCGGTAA 26125 31 100.0 34 ............................... ATCAATGAATAGGACAAGACCGAAGCAGATAGTT 26190 31 100.0 34 ............................... TTCGGTCTGCCCTCTACAACTCGCTCTTGATACC 26255 31 100.0 34 ............................... CTTTGCCAGACGGTCTAATCTGTGTCGCTATAAT 26320 31 100.0 35 ............................... AGTTGTATCGAAACCGGGAAGAAGTGCTTGCGGAG 26386 31 100.0 36 ............................... GTTTTAAATGAGGACGGAACTTCAAAACAAGCTGAT 26453 31 100.0 34 ............................... ATCACGCTCGTAAGTGTATCAGACTGCTTCTCAA 26518 31 100.0 35 ............................... CGTAAATTATGAGAACGGTCATAAGCTCCAATGGA 26584 31 100.0 33 ............................... TCGATTGACCCATTTTGAAACAAAGTACGTATA 26648 31 100.0 34 ............................... CCTGTTTCGATACAACTGAACCGGCTCCTGCAAG 26713 31 100.0 35 ............................... GACTGACTCCCTACACACCGAAACCCCTGATAAAT 26779 31 100.0 33 ............................... AATGTGCTGCTAACGCCTGTTATCACCCACTTA 26843 31 100.0 35 ............................... CGGTCAAGCCACGACTAAACCAGCCGTATGACCTG 26909 31 100.0 34 ............................... AAGTGAAAAGTGTAAGAGTGTATCCGGTATATCA 26974 31 100.0 37 ............................... TATCGGGAGCTGTTTCCTGCTGGCAGTCTCCAGCAGG 27042 31 100.0 36 ............................... TTTGTATGAGGGCAAGGTCATGGTAGATGAAATGAC 27109 31 100.0 34 ............................... CTGTCCGATGAGCTGGTTACTACCGATTGTATAC 27174 31 100.0 33 ............................... CGTACTTGTCTCCTTGCGAAATGATATATGTGT 27238 31 100.0 35 ............................... CCGTATGACAGGCTTAAAAAAATAGCTGATTACTT 27304 31 100.0 36 ............................... GTGTCCTTATGGTAAACCACATTCAGTACATTCTTC 27371 31 100.0 34 ............................... CCAGTGTATATGTGGTAACTTGCGTCACCCGTCA 27436 31 100.0 33 ............................... TTGATTGGAAAGTACGTTTGCCCAAACATTCCG 27500 31 100.0 33 ............................... CGCAAAACAGGCAGAAGCAAACAACAGCAGGGA 27564 31 100.0 35 ............................... TTGGCTACCGTCCTTGTCATAAGAGACGATTTCCC 27630 31 100.0 33 ............................... GAGGACAAGGACAGCAAACGAAGCTACATTGCC 27694 31 100.0 35 ............................... TTAAATGGAGTATCACAAATCATAGCCAAATCAGG 27760 31 100.0 34 ............................... CAAAAATCATGAGGATAGTTTTACCTTTACCCCT 27825 31 100.0 34 ............................... GATCTGCATTTTATGCTCCGGCCAGCACACCGTT 27890 31 100.0 34 ............................... CCAGATGTACGACAAGTATGCAACAGAAGCTAAA 27955 31 100.0 36 ............................... TTCCGTATCCGGTATGACTGCATATGTTGGCGATCC 28022 31 100.0 36 ............................... CTGTATCAAAAGTTCCTGGCTTATTTTGCGACAATA 28089 31 100.0 34 ............................... CGTTGGCTTCGCCCATGTACTCGTTGTCGTAGGC 28154 31 100.0 36 ............................... TTTAGGAGGTGGATACGATGATCGAATGTCATGAGC 28221 31 100.0 36 ............................... ACGAAGTAGTACCACGCCGGGACCTTGCCTTGCGTA 28288 31 100.0 34 ............................... GTTTTGTTCAGCGTAGTGTTTTTGTACCCGCATT 28353 31 100.0 34 ............................... AAGGTATTCTTTATCCGTGTAAGTGTCAAATCCA 28418 31 100.0 33 ............................... CAGTGTTTATGCGGGTTTGCGGGTTTTAAGTAT 28482 31 100.0 33 ............................... CGGTGTCACTGCCAAGAAGGTTACCCTCTTTGA 28546 31 100.0 35 ............................... TGGCAGGGCGAATGGGCTGGTGGTGTGGTTGTTGG 28612 31 100.0 35 ............................... TTAATCTTAAAAAGCTCAATGAGATATGCGTTTCG 28678 31 100.0 33 ............................... CTCGCTCCATTTTTAAGGTAAAAGTTTCCAATC 28742 31 100.0 35 ............................... ATATACTATCACCCTATTTTGATTTTATGTTATAC 28808 31 100.0 33 ............................... CTATGTTATCACGGTGACAGCCAGTGCAGACAA 28872 31 100.0 35 ............................... ACTGTAAGCATCCGGGTCATAGTTCCACGGGATTT 28938 31 100.0 34 ............................... CTTGATATTGCTGCCAAGAAAACCTTCCAGTGTT 29003 31 100.0 33 ............................... TAGGAAAGCGTACAGCCCTCATTATCAATCGGC 29067 31 100.0 35 ............................... TGTTGTAGTAGGCGGTGTTGCTGTGGCTGTGGTCT 29133 31 100.0 34 ............................... ATTTGTGCGGGTAACCTTGGAAACAAGGGTTGTC 29198 31 100.0 33 ............................... AACCAAAGAAGACGTTGAAGCGGCATGGGACGG 29262 31 100.0 36 ............................... GCCATATTCTTCCCCTTTCCACAGATAGCGGCAAGG 29329 31 100.0 35 ............................... GTTTTGACCTTGTAAAGATCAATAGGGGGCGAGAA 29395 31 100.0 35 ............................... CTTATAGAAGTTTAAGGTATACTTGTCGTTACTGG 29461 31 100.0 34 ............................... ATGCAAAGTTACAAAGAACCCGTTGCAGCACTTG 29526 31 100.0 33 ............................... ATCCGGAGCATCCGGAAAATACGGCTGCTCCTT 29590 31 96.8 34 .............G................. TTTTATTTGCGGCCATGCTTGAAGGTCAGGCCCT 29655 31 96.8 34 .............G................. CCGTTTGGTATCGCTCACATTCTCCGCGGCTTTG 29720 31 96.8 33 .............G................. CAGAAAGTCACGTATTGTACAAAAATATTACAC 29784 31 96.8 33 .............G................. TGATTGTGTGGCTACGCAATCCCGTTGGGCTAT 29848 31 96.8 33 .............G................. TGCTATGCAGATTGGCATGGAAATGGCGAAGAA 29912 31 96.8 34 .............G................. ACAAGCCCGACCGTAATAGCCTGCTTGATGTCAT 29977 31 96.8 34 .............G................. TGAACTCCCGCACGAATCACTGAACGTAATAACT 30042 31 96.8 33 .............G................. ACCCAAGAACAGATTGATGACCTGTGGAAAATA 30106 31 96.8 33 .............G................. TTCCTGATGTTGGCCATCTTCCGCTTCATTTCC 30170 31 96.8 35 .............G................. ATTTCTGAACCCCGGATTGGTTTTGTATCACCGTC 30236 31 96.8 34 .............G................. CCCTTGTCCACTTTTGATCTGGGCCTTTAGGACT 30301 31 96.8 34 .............G................. GTTATCTCCATACTCGGATGGCTTTTTCCTGATC 30366 31 96.8 34 .............G................. ATAAATCAGCAAATCCTCGCCAGTAGCTTTCTTG 30431 31 93.5 36 ..........T..G................. GTTACGGTAACGATTGACGCAGATTCTCCGATTGAC 30498 31 96.8 34 .............G................. CTGGTAGATGTCTTTGACCCAACCAGCAGCCGGT 30563 31 96.8 33 .............G................. CAGATGGCTCTTGCTATGGCGAAAGGCCGTGTC 30627 31 96.8 34 .............G................. ACCTGCAAGCAAATGAAAGGCATGGTGCGTGAGG 30692 31 93.5 34 .............G...T............. CATTGCGCATATAAGGTAACTGTACCGTTATTGT 30757 30 74.2 0 .............T....TA.A.-..C..CA | ========== ====== ====== ====== =============================== ===================================== ================== 76 31 98.8 34 GTCGCTCCTTCGCAGGAGCGTGGATTGAAAT # Left flank : TTTCCTTTGGAAGTGAGGTGGCAGAAGATGCTTGTATTGATTACTTATGATGTAAATACAGAAACAGCAGCAGGAAGAGCCCGCTTGCGAAAAGTTGCCAAGCAATGTGTGAACTACGGGCGAAGAGTGCAAAATTCTGTGTTCGAATGCATTCTCGATAACGCCCAATGCATTATGCTAAAATCCATTCTGACAGATATCATAGATGCTGAGGTGGACAGCCTGAGATTTTATTATCTGGGAAATAAATACCAGACGAAAATCGAGCATGTAGGTGTAGACCGCGGTACAGCCGCTGATCAGGTATTGATTATGTAGTACGTGTTCGGTGCGAGTCGAAAGTGTACATAAAAATGACAGGAGACTCGCACCCGAAAAAAGTAACAAAACGTGTTAAATGAGCATTTATCGAAATCAATTTGAAACATCCTAAAAATATGATTTGTGCGAAATGTGAGAGAAGATTGTATGTTGGAGAAAGAAAATTAGTGATAAATGAC # Right flank : AGACTTAAAAAACATAAGTTTTAAACAAAAGAAAAACTTCGGACGCGCGCAAAAAAGAAATACAACTCAATGTAAAATTAAAAAAATAAAGATTTTAGTTGCATTTTCAGAAAATGTGGCGTATACTGTCTGCAATGGGAAGGCAACGGCGCTTTTAAAGCAAGATTTGTCTGCCCTTTTTTTGTATCATAAGAACTTTTGAAGTTATCTTATGAAACAATTTATCGCATACAGAAAAAATTTGGGAATGTGTTTTCTGTATGGATTGTAACTGCTCGGCTTCCGATCGGTTGGTTGCATAAATTTTTATTAGACAGGAGGACTTCATATGAGTGAAAAGAAAAAAGGCGGCAGCGCGCTCTTGGGAGCAGCATTTTTGATGGCAACATCTGCAATTGGACCAGGTTTCCTTACTCAGACATCCACATTTACGGGTCAGTATCAGGGCAGTTTTGGCTTTGTCATTCTGGTATCGATCATCCTCGCGGCAATCGCACAGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTCGCAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //