Array 1 13374-13764 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRTM01000165.1 Streptomyces scabiei strain 96-08 9608_166.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13374 28 96.4 33 ........T................... TCCGGGCCACCGGGCAGAGTCGTCGTCGAACGG 13435 28 100.0 33 ............................ CAGCATCCGCTCCCGGACAACGAGCAGGACTGA 13496 28 100.0 33 ............................ CTCGTACACGCCCGGCGTCACGTCCACGATGGT 13557 28 100.0 32 ............................ TGGCACGCTCGGCGAGATCGTCTACTCCATCA 13617 28 82.1 33 C..GC....A....G............. CTGCTACCTCGGCGTGCCTCGGCCCGACGCCAC 13678 28 89.3 30 C........A...............C.. CAAAAGCACGAGGCCAAGTAGAGGTACACA 13736 28 85.7 0 ...CA....A....T............. | G [13739] ========== ====== ====== ====== ============================ ================================= ================== 7 28 93.4 32 GTCTTCCCCGCACGCGTGGGGGTCTGTC # Left flank : CTGCTATCGTCACGGCGAGCCAGAGCGCTCCCTCCCCGCACACGTGGGGGTCCGTCTTGGAGATAGCAGCGGGCGAGGGTTTTCGGTTTGTGTTCCCCACACGCGTGGGGGTCTGTCCACGTCGAAGGCAGCCTGGAGTTGGGCGAGCCGCTCTTCCCCACACGCGTGGGGCGTGAACGGTCGACTCTGCCCGCCTGAGTACGTGCACCCGTTGCCTCCTGTCCGAGGAGCGCGCGTCGGCACGAGCAGGGGCGGCCACGGAGCGGATGCCGGAGACCGCGAGCAACTCGTCGCCGCCAGCCAGCGGTCGATGTCCCTCAGCCGGCACGGAGGGCCAGGATGCCTTGGTACCGGATGCCCGCATCACCGTTCCCAGTCCACCGACGCCCTGGCACCGGCCCCCACCACAGCGTCGGCACGCAGGTCTGGCGGCCGAACACGACTCATGTAAAGTCAAGGAAAAACGACGTGCCGATCTTCAAAGCCCCAGTTCGGTGAGG # Right flank : CCCACCTGCCGCGCCGAGTACTACGTTTACTGAGTGCGTTGTGGCAAAGGGAGTCCCTGTTCGGTGAGCAGGGGCTTCGTCGTGTGCGGGGCATGATCGCGGCGGGGTAGGGGCAGGCAGCGGACGGCTTGTTGTGGATCGAGGAGGGTGCGATGCCGTCGGTGCTGAGGTTGATGGAACAGCGTGAGGCGCGGGCGAGGCAGGATCTGGAGTCCTGGACGGAGGTCCTGGAGCAGGCTCAGGCGGAGGTGGATGCCGCGCGGGAGCGGGTCGAGCGGGCCCGGGTGGGGCGTGAGGAACTTGTGTCGGTGCTGGCTGGGGAGAGCCCGGTGAATACGCCGGTTCTGGTGCCGTCTGGTGGCGAGATGGCTGCTGCCCTGGGGTCGAGCGGCTCCGGCGTGGGGCATGGTGAGCGGCCGCCGGTGTGGCGGTCGGGCATGGGCGAGGAGGTGCTCAGCGGCCTGTATCGGGAGGTGTTCGCCGCGATGGTGGCCGCTTCG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACGCGTGGGGGTCTGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3200-2339 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRTM01000028.1 Streptomyces scabiei strain 96-08 9608_28.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================== ================== 3199 28 100.0 33 ............................ CTCGGCGACGACGAACTGGAGCCGCCCGTCCCG 3138 28 100.0 33 ............................ CCCCCAGCGTCCCGTCAGTGATGTCGCGCACCA 3077 28 92.9 33 .......................AG... CTCGTTCCAGCGCACCGACAGCCGGTGGCACTC 3016 28 89.3 32 ...........G..T..........C.. CTCGCTGACGAGCATCTTCGGGGTAGCGGCCG 2956 28 78.6 35 ..AC......TG..T...........C. TCCCGTCGTCGAACAGATTTCCCTGGGCCAACGGT 2893 28 85.7 33 CA.........GT............... GACGACCGCGTCCCGGCCCACGATCCGCCACCG 2832 28 82.1 33 ......T...........AA.A....C. GAGGCTAGAGCAAAAGCCAGCGGAGCAGCCGGA 2771 28 85.7 33 ...AG........A..........C... CGGGACCGCCACCGCGACGTACAGCCCGTTCGG 2710 28 100.0 72 ............................ GGTGGAGGCGGTGAACACCGCGATCAGCAGGGGGTGGCTCGGCCATCGGCTGATGCGTCATCGTGCCCGCAA 2610 28 85.7 31 .GG.........T..........T.... TATCACTGACACCGTCGCCGCTCGTGCCATG 2551 28 92.9 34 T............C.............. CACGAACGAAGCCACCGCCGACTTGGTGGTCGAC G [2548] 2488 28 85.7 33 .C...........A........G.A... CCAGTAGCAGGCCCCGTCGAGGGTCCACTCCCA 2427 28 82.1 33 AC.........T............G.C. CTCGATACGGCAGTCATCCTCGCTGCCGGCGGC 2366 28 82.1 0 A........GG.........A...C... | ========== ====== ====== ====== ============================ ======================================================================== ================== 14 28 88.8 36 GTCTTCCCCACACGCGTGGGGGTCTGTC # Left flank : ACCTCCCGGTAGAGACCGCCGAGCACCTCCTCACCCGTGCCCGACCGCCACACCGGCGGCTGCTCGCCGTACCCCGCGCCGGAGCCACTCGATCCCACAGCGGTAACCACCGCACCACCAGACGGCACGGAAACCGGCGAACTCACCGTGCTCTCCTCAGCCAGCACCGACACGAGCTCCTCACGCCCCCACCCGGGCCCGCTCAACTCGCTCCCGCGCGGCATCCACCTCCGCCTGAGCCTGCTCCAGGACCTCCGTCCAGGACTCCAGATCCTGCCTCGCCCGCGCCTCACGCCGTTCCATCAACCCCAGCACCGACGGCATCGCAGCCTCCTCGATCAACAACAAGCCGTCCGCTGCCTGCCCCTATCCCTCCGCGGCCATGCCCCGCACACGAAGAAGCCCCTGCTCACCGAACAGGGACTCCCTTTGCCACAACGCACTCAGATAAACTGAGTGCAATACGGCCTGCTGATCTTCAGATACGCAGGTCGTCAAGG # Right flank : GAGTCGGACTTCGTCGTACGACAGACTGCACGCGCTCCAGAAAGATCGCCGACTTCCGCTCCCGGGGCTCCATCGCCTGGGGTCCAGATCCAACCGGATCAGAATATCTGAAATGTCCCCCTCAGTGCCCCGCCTGGCCGCTGGCAGGCACACCCCTGCCTGAACCTTGCGGACATCGAAGCACGCAACCCCTGAGCCAGGCGTGGAGCGAACGACCAGCAAGGCCAAGCCACTTGATACCCCAGGCGAAGAGGCCCCAGGGCACCGCCAGACGACCAGCCACCAAACTGGGCCTCCACTAGGGTTGGGAGAGACGCCTGCAGGTCAGGCTGCCATCCCTATGGCGTTCTCATCTCGCCGCGCTGGAGATTCTCAAATAATGTCATCAAGCCTTCTCATCTGACGTCACCTTTTATCCGCTGTGACCAGCAGAGATGCATGACATTTAAGTGAGAACTGATGGTGGCGCCGGGATGAGAAGTCGCACGCAGGCGCGCGAG # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-0.19, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTCTGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //