Array 1 44-299 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPKM01000044.1 Azotobacter vinelandii strain DSM 279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================== ================== 44 24 87.5 33 .....T.......TG......... GTTCCACTGGAACCACTCGATCAAGCCGAAGCC 101 24 100.0 34 ........................ ATTCGGCCCGAATCACTCTGCAGAACCTGAAGCC 159 24 91.7 34 ......AT................ TTGCGGGCCGCAGCACTCGATCAGGCCTGAAACT 217 24 100.0 35 ........................ GTTCCACTGGCACCACTCGGCCAGAGCCTGGAGCT 276 24 91.7 0 ..............GA........ | ========== ====== ====== ====== ======================== =================================== ================== 5 24 94.2 34 CCGGCGCCGCCGGCAGGCGAAGTG # Left flank : GCGAAGTGATTCGGCCCGAATCACTCGGCCAGGGCCTGGAGCTC # Right flank : GGTGCGGGCCGCAACACTCGGCCAGGGCCTGGGGCTCCGGCCCCGCCTATATAAAGGAAGAAGCGCCAATAAAATCCCTTCAGGTGGATTATGCATTTCTTGCTGCAACTCTGACCGCCGATTACCAGCATAGGCATTCCTTCTTCATCTATAAGGAATCGTCCATGGCTGACAACTACCGGCTCAACATCGGCTCCCTGCGAAGCGATGTGCAGCTCACCCTCCACACTCACCACGCCGCCCGCATCTGGATGGGGCGCCAGAAGTCCGACGACAAGCCCATCATCCCTGGCCTCGCCGGCTTCTGCGCAATGCTCAACCGGATGACTCGCGGTGCCGCTCAGGACGACCCCTATTCCGATTGGTGGATCATCCAGATCGAAGAAAAAGTCGCCGCCTCCAACGCCGAGCTGAAGGAGATCGACAAGCGTCTGGATGACGTCATGGCCCAGTTGCCCTCCACCATATCCATTGGCGACAACCTCTCCATCCAACCAGTC # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGCGCCGCCGGCAGGCGAAGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 31118-31389 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPKM01000034.1 Azotobacter vinelandii strain DSM 279, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31118 29 100.0 32 ............................. TGAGCCTTTCGTACGAAACTTGGAACACCAAC 31179 29 100.0 32 ............................. TATGCCGAGGCTCCGCTAAGAATCATCAAGCC 31240 29 96.6 32 ..........T.................. TCGGTGACGAACCGCCGGGGGATGACGACCAC 31301 29 96.6 31 ............A................ ATGATCGGGTATCCGGTCGCCGTGCTTGGGA 31361 29 75.9 0 ..A.......T.A.C..A........G.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GCGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : GCTGCAGGTGGTCGAGGCCGACGCGCTGCGCCGGGCCCTGGCCAGCGGCATCGGACCGGCCAAGGCGTTCGGTTGCGGCCTGCTCAGCGTGGCGCGCTGCTGATGCCGCCGCCGCTCGAGCCGCTGCGGATGAAGGCGCGGATGTCGATGATCCGCTGCCGCGTACCTTGCGGCGACCGTCGGCATCTTGTCGGTCCGGCTGGGAGCGGCGGACGTACGCCTGCATGCCGGCGGCCGGCCGGACGCACCCGCGAAATGATCTGGTAGCACCTGGCCGGAGGCTGCGAGGAGGATGGCAACCTGCTCATGGCCTGGACCAGCCGCCACGAATCCGGCCACGAGTTCCAGACCCAGGGTGCGAACCGGCGCCTGCCGGTCGAATTCGATGGCCTGCACCTGATGGCTTTCCATCCGCCGGAAAAGCCCGATCCTTGGCAGGAAAAACCGGTAGATTTCTGGCATCTGGTTTTTCCCTTTGGGAACAATCGGTTACGCTAAGT # Right flank : AGTAGTGCCTAACTCTTAAGCGTCTTATGGGGGCTTCCCCGCGTCATCCACAGCCTCATGACTGAGGCTTGTACCCGCGGGCTGGTGTTGGAGGCGAAACTGCCGTCGGGCGGGGAGGGTCTGGATCGGTCCGGGAGTGGCATGTGGAAAAGCGCTACGTCGAGTCGGCGAGGGAGCGGGTGGCGGAAAGGGTGAAAGATATGCAGCGTAAAAATAGCATCTTGCGATATTTGAGCGCGGGCAATATTCTCCGTATCGCGAATTGCTATACGGATGTCGCGGTATGCATGTCATCACACAAAAGCGCATCTGGGAAGCCAAGGAAAAGTGGCCTCACTCCGCATCCGCACTGGATGCGTGGTATCGCCTGATGAGCAAGCTGGCACCGAAGGATTTCGCCGAGATGAAACAGGCCTTCCCCAGCGTGGACAAAGTGGCGGACAAGCATGTGTTCGACATCGGCGGCAACAAGCTGCGGCTCATCGCCGTGGTGGACTACC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //