Array 1 521225-521973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061080.1 Mesirhizobium sp. NIBR3 strain N3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 521225 36 97.2 34 A................................... AAGAAAAACGCCTTGTCGTCGAGACGGCAGATGA 521295 36 100.0 33 .................................... CGCTGTTGTTGGTGTAGTAGCACGCCGCCGCCG 521364 36 100.0 35 .................................... AAGGTGGTCGTTGCCACCATCAACCCCGTCGTCAC 521435 36 100.0 33 .................................... CGCTGCGTACAGTTTATCCGCGATCTTGTACTG 521504 36 100.0 38 .................................... ACCGCTTGTCATGCCACCACCGCTTTCCCACATCGCGG 521578 36 100.0 37 .................................... ACGATTTCGAGTGTACTTCTCCCCTTGGGTGAACCGT 521651 36 100.0 36 .................................... AGAACATAGGACATTTTCGCGCCCTTCCACCGGCAA 521723 36 100.0 40 .................................... CCGGCTTCCATGAGTTCGTCGAGTCGGGTGAGGGCTTCGC 521799 36 100.0 33 .................................... GAGACCGTCACGTTGCCGTTGACCTGCAGATTG 521868 36 100.0 34 .................................... ACCACCAGCGCGGCCATGGTGACCAGACACGACA 521938 36 75.0 0 ............C....C.G...GC...CC..G.C. | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 97.5 35 GTCTGGAACTCAGCCGCACATCACGCGGATTGAGAC # Left flank : GATCTCGCTCGGCGCCGCGGCCGGCGGCTGGATCGCGCCGCCCGGGCCGCTCGCCATCCTCGTGATCGGCGCCATTCCCGTCGCCGCCGCGGGGCTGAGCTTCGGCAGGCCGCGCAACCGCGCCATCGCCGCCGCCTTCGCCGCCGCGCTGGACGGGCCGGGCGGCGCCACGCGCATCCTCCTGGCCGGTCTCTCCCTGGTCGGCCTCGGCCTCGCCGCCGGCGCTGCGACGGTCGCGGAATTGTTCGGCTAGGGCCTCCCGCTTTGCCGGCCCCGGCGGCAGAAAGAGAAGCGAGAACAGAGGCTTGCAGGGATCCCGCCGGACTCCGGCGCGGTCAGGCCTTTTTGGAAGGAGATCAAGGCATTGAAAGAAAAAGAGAAAAGTGACGTCAAGATGCGAAGTGTTCCGTATTCGTTCTATATTTCGGCCGGACAATTCGCGACCTTTATGGAAAGAGCCGATTTTTCGGCAGGCTTGACAAAAGGCTCGAACGGGGTGA # Right flank : CGACGCTCGACCTGTCGTCCGTGTCCTGTGCCCTGCGTCGCGGGGACGTGCATGCCGTCGTTTGACCTCGCATTCCGCGCTTGATGGCACGCCGTGGCGTCATCGCGTATTTCTGCGCCACCGGTGCGAGGACACCGAAAAGTTGTTGCAAAGTCTTGCCGAAGCTTCCTATCATGCTTTGCAAGTTCGGTGGGGAGGCGGCGTGTCCAAAGTCTATCTCTGGCTCGAAGGCGTCGATTTCGCCGAGTTCATCGACGACACCAACCAGATCGCCGTCATCCGCGGCGCCTCGCTCGCGCTGCTGGCAGCCGGCGAGGAGGCCGAGGGTTGGCTGAAACGCAACCAGCCGGCGCTCGCGCCCGAAAAGATCTTCTCCGGCGCGTCGCTGTCGCTGTTTCGTCTGGCCTGTGACGAGAGCGGGGGCGAGGTGGTGGCCGCTGCTCTGCGCCGGCACCTCGCGGACAGGGGGCTGAACGTGCTGGACGTCAAACAGCCCGTGA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGAACTCAGCCGCACATCACGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 537001-535932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061080.1 Mesirhizobium sp. NIBR3 strain N3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 537000 36 100.0 33 .................................... GATAACCAGCATGGTACGGCGTGGTGATGCAGC 536931 36 100.0 33 .................................... ATTGCGGATGGCACCGTCCTGCGGGCCCGTACC 536862 36 100.0 33 .................................... TCGAGTAGGTGAACCCTTGCTTCTCCTGCTCCT 536793 36 100.0 34 .................................... TTTCCAGCCGCTGGTAGGTCTCGTGGTCGGCGGA 536723 36 100.0 33 .................................... CTCCATCCCTCCATGACGTCTACGTGTATTCCG 536654 36 100.0 33 .................................... ACGGTGCGGGGGTCGCGCCAGCGCAGGGGTTTC 536585 36 100.0 32 .................................... GAGCTGTAGACGTCCACCGGCACTTCGATCCG 536517 36 97.2 36 ....................T............... TTTCTTCTCGGCCCTTAGGGCGTTCCTGTCGGCGAA 536445 36 97.2 36 ....................T............... CAGGAAACTCCGGTGCAGGCCTGCTGGAAACCCTCG 536373 36 97.2 33 ....................T............... ACCGAAACGGCGGCGATCGAAGCGGCGAGAAGG 536304 36 97.2 32 ....................T............... AGGCCTTGTGGCCGTGCTCCGCAATGTATGTC 536236 36 97.2 32 ....................T............... AGGCCTTGTGGCCGTGCTCCGCAATGTATGTC 536168 36 94.4 31 ....................T......A........ CGCCTTGGCGCGCCGGGCGGCCGCATCTTCG 536101 36 94.4 30 ....................TG.............. TTGCGCGGAGGAGCTTCCTCCATCACCCGT 536035 36 94.4 32 ....................TG.............. CTAAGACGGCGACGATTGCCGTCCAAACCGCG 535967 36 97.2 0 ....................T............... | ========== ====== ====== ====== ==================================== ==================================== ================== 16 36 97.9 33 GTCTGGACCTCAGCCGCATTCCACGCGGATTGAGAC # Left flank : AAGCTGCACGGCCGGCCGGCCAGCGCGGACGCCGACGCGCCCGCCATCAGCCGGCCGCCCCAGGCGCCGCGCACCCGGTTGAGAAGCGTGAGCACCGGCATGTCGGGCGGGCGGGCGGTGCGCACGATGATCACCTGGTGGAACCACCGCGCGGCCAGCGCTCCGAGGTCCGGCCTGTCGGCCGGCGCGGCCAGCCGCCGTGCGATCTGTCCCTCCGCCACCTCGTCCGGTCCCCACGCCATGCCGCCCCCGCCATCGCCGCCCTTGCCGGCACAAGAGCCGATTTCGCGAAGGGTAACAAGCACTTGCGGGCGTCGACGCCTGCCCGGAGGGTCTGGAAGGCTTCGTGGATTCAGAATAAAGTGAGGTAATTCAATATATTGAGTGATTTCAGCGGCAAGTTGATCATGGTATGTTCCAGAATGTACCTCAAATCTGGCGTCCCTTCATGGAGAGAGGTGCTTTTTCGAGCCTCTTGACAAGGGCCTCGGAAGGGGTGA # Right flank : ACGAACTCGACGAACACCGGGAGCGTGTTCTGTCTGGACCTCATACTACTGGCCTTTACCTTCGACCTTCGCGCCGCCCCTCATCCGCCTGCCGGCACCTTCTCCCCGTAACACGGGGAGAAGAACGCCGTCACCGACGGCTTCGCCAGTCGCAAAGGTCGCCTCCCTGGTGACGACGTCGCGGCCGTGCCCCCTTCTCCCCGCTTGCGGGGAGAAGGTGCCGGCAGGCGGATGAGGGGCAGCGCCGTGGGTCAATCGAAAAGACCGCTGGTATCAGCCGCATTTCACGCGGATTGAGACAGCTCGTCGCGGAGCATGGCCGTGTCCATCTGTCTGGACCTCAGCCGCATTTCACGCCGATTGAGACGAAGCGTGGCCGCCGTCTCCGGCCGCCGGTGGGTGGCCGTCCGGCACCCACCCGCACACTACGCCGATCGAGCCGCACCGACGGCGGCGGACGCCGCTCCTTGCCGCCCGTCCGCGATACCGCCGCGCGTCGC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGACCTCAGCCGCATTCCACGCGGATTGAGAC # Alternate repeat : GTCTGGACCTCAGCCGCATTTCACGCGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 3800510-3799576 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061080.1 Mesirhizobium sp. NIBR3 strain N3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 3800509 36 100.0 30 .................................... GCGAGGACGATGTCGTCCTGCCCCTCGACG 3800443 36 100.0 33 .................................... AGGCCGATCTCTGGAACATGTACCCACTGATGA 3800374 36 100.0 30 .................................... TCCACCGCCAGGCGGTAGAGCATCGCCGCC 3800308 36 100.0 32 .................................... GCGCATGCGCGCACAGCTTTAGCACGCTATCC 3800240 36 100.0 32 .................................... GGTTATTCTCGAACTCCTTGTGGGCGCGGATT 3800172 36 100.0 32 .................................... TGCCCACGCGGGCCACCTGCCCCGACGGGGCG 3800104 36 100.0 52 .................................... CGTCCCCGCCCCGCACAAGTGCGGAGGGGACGGGAAGTACTACCGAGCAGTT 3800016 36 100.0 31 .................................... CATCGCAGGAGCGGCCTGTTCGTAACCCATG 3799949 36 100.0 32 .................................... GGCGCCCGCGAGCTTGTCGAAGCCGATCTCCT 3799881 36 97.2 31 .....................G.............. ACCGCAACGCGCGGAAAAGGCAATCAGTGCC 3799814 36 100.0 32 .................................... TGCACGGGATCATCTACGACACGATCGGGAAG 3799746 36 100.0 32 .................................... GCGGCCGAGGAGTTCGTTCAGCCGCTTCACAC 3799678 36 83.3 31 ....C...C..........C........CC..C... CTTGTGCCTCTTGTCCTTCCGGTCATCCGCG 3799611 36 69.4 0 ....A......CT......C....C..A.GC..CGT | ========== ====== ====== ====== ==================================== ==================================================== ================== 14 36 96.4 33 GTCCGGGCTTTTCCCCGTTTGAGAGGGGATTGAAAC # Left flank : ATCTGGCGGGAACCGGCCTCGCCGGACCGTTCCGCGGGCGCGGTCCCGCCGGGGTGGCGGCCTCCCTCGCGGTCGCGCTCGTCGGCATCGCGGCCGCCGCTTCCGCGGTTGCGGCGGCGCTCTTCCTGCCGCCGCTCGCGCAGGCGCCCTGGTTCGCGCCGGCCGTGCTCGCGCTGGCACTGGCCTCCGCCGCCACCTTGCCCTTCGTGCCTGCAGGCGGTGCCGACCTAACGCGGCTCGAGGAGAAGGCCCGGCAGGCGCGCCTGCGCCAGGCCGCCGCCTTCCGCGCCGCGCGCGAGGCCTCGCAACGGCTCGAACGCATCCACGCCGACCACCTCGCCCCCCTCGCGCGCCTCTCCGGCCGCCCCGCCGGCTGGCGGCGAAACGCGAACGGAGAGTGAACAGATGATGGCTTTTCTTCACAAAAATCGTAACGAAAAAAATCTTTGGAATCACCTCTTGCAAGCCGCTGAAAACATGAGGATAAATCGAGGGGGTCA # Right flank : CACTTTCCGGGAGATTGCGTCCGATGATCTGGCTCCTTGGCGGGATGGCCCTCCTGTTCTTTCTCTTCTCGGAGGGACTGCAGGGAAACCACGCCGCCATGATCATCTTGCTGGTCATCGTGCTCTTCCTGCTCGTCATCGTGATCTGATCGCACGGGGAAGCGGACATGGAGAGCCCGGCCTGGCTTCTCCGTCCGGCGGACGACTTCTCCCGCCGCCGCTCCCGTGCCCCGCGGCCGGGCTTGCGGCGGTTGCATGCGGGCTGTGCCACGTGGCATGGTGGCGCCATGGACAAACTCCTGGCGGAAGACTGGCAGCCCTGGCAGCCCGGTTCGAGCGTGCGGCCGTTCCTGCCGCTCACCGTTGTTTCGCTCGACGTCCGCTTCGACGAGGTGGCCGATCTGCCGGCCTTCCGCGGGGCGCTGTGGCGGTCGGTGCTCGGGCCGCAGCTCAAGCTCTTCGATGCCGAAGGCGGCTGGCGGCCGGACGCGCCGGCGCCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGGCTTTTCCCCGTTTGAGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 4 4300070-4303332 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061080.1 Mesirhizobium sp. NIBR3 strain N3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4300070 29 100.0 32 ............................. CGTCATCTCGAAGCTAGAGACGGGGGAACAGC 4300131 29 100.0 32 ............................. CTGTTTGGTCTAATCATCGATCACGTTAGCAA 4300192 29 100.0 32 ............................. CAGTCGCGAGACTTGGAAACGCGTCACCGTCC 4300253 29 100.0 32 ............................. CAGCCGTATCCGGCGACAGTGGCGGCGATCCT 4300314 29 100.0 32 ............................. TCATCATGGTCGCCATCATCGCGATCGGTCTG 4300375 29 100.0 32 ............................. CCGAGGCAGCCTGATGCGCGCGCCCGTCTACA 4300436 29 100.0 32 ............................. GCGACCGATCCGTCTCTAAATTGGGGGGCGGT 4300497 29 100.0 32 ............................. TGATCCAGCCATGTCTGATAGGCTCCATGCTG 4300558 29 100.0 32 ............................. GCACTCGAACAGGCCCTGCGGGGCGAGGAGGG 4300619 29 100.0 32 ............................. CGTTCGGGCGTCTGGGCATGCCGTATCCATGC 4300680 29 100.0 32 ............................. GCTTCGGTAATCCATGCGTTCGTGTCCGTGCC 4300741 29 96.6 31 ............................A TGGCGCAATCTTTCGTAAGTTGGAGGTGTCG 4300801 29 100.0 34 ............................. CCATGTCGGGCCGGACCTGATCGGCCTCGCGGCC 4300864 29 100.0 32 ............................. GGCATTCCGATTCTCGGCTCTGGCGTCATCTA 4300925 29 100.0 32 ............................. TGTCGTGCAGCGGAACCATGTCCTGACAGAAC 4300986 29 100.0 32 ............................. AGCGTAGGCTATGGGATAGGCGAGGATGGCGC 4301047 29 100.0 32 ............................. AAGCCCCACCTCTTCGTCCCGCAGGCCTTCTG 4301108 29 100.0 33 ............................. ACGGCAACCCGATCACCTGGTCCGCGTGGGGTC 4301170 29 100.0 32 ............................. CTCTACGCCGTTCGCGGATACGTGCGCCGCTC 4301231 29 100.0 32 ............................. CCGTTCGTCGTGACGAATCAGGACCCGTTCGA 4301292 29 100.0 32 ............................. GTGCTCGGGGGCTCCGGCAAGCAGGAGACCAC 4301353 29 100.0 32 ............................. CTCGCCGAAGTCGACGAGGAGCTGCGTCGCTA 4301414 29 100.0 32 ............................. CCTCCAGAAGCCAGCCGAACGCCTGCTCGAGA 4301475 29 100.0 32 ............................. CAGCCCGCCATGTCTCAGGCGGGCCGACCGGG 4301536 29 100.0 32 ............................. GTCTACGTGCTGGAGCTGCTCCGGGCGGCCCA 4301597 29 100.0 32 ............................. CCTTCTAGGGCAGGCGCCAGCGGAGGCACAGG 4301658 29 93.1 32 .................C..........C GGCATGGAACTGGATTCGAGCACGGCAACGAC 4301719 29 100.0 32 ............................. TCGTTTGACGGCGAATGATCTAGATCAATTTC 4301780 29 100.0 32 ............................. CGTGTCGCCGCCCTGAGGCTGCGTGTTTGTGT 4301841 29 100.0 32 ............................. GCTTCGGCGCCGTCGGCATCGGCTGGCCTCGC 4301902 29 100.0 32 ............................. GTCTCGCCGCGGCTGACGACGTCGGACGTGTT 4301963 29 100.0 32 ............................. GTCAACTCCGTGGGCGGCTCTGGCGGGGGCGG 4302024 29 100.0 32 ............................. GTCAGCCCGTCGTCCTTGGCGCCGGCGTCGAG 4302085 29 100.0 32 ............................. CAGATCTTCTGGACATGGTGGCGCACCGATGC 4302146 29 100.0 32 ............................. GGCAGCGACCTGTCGCAGGCGGGTATCAACGA 4302207 29 100.0 32 ............................. GTTCCCGACGTGTTCGCCGAACTCGCCGAAAA 4302268 29 100.0 32 ............................. GCGCCGGAGGATGAGGGCGCGCTGCGCGACAG 4302329 29 100.0 32 ............................. TTGTCCGACGGAACGTTGATTGGCTGTCGTAG 4302390 29 100.0 32 ............................. CCGATGGCGCAGGCGACGAAGAGGGCGGTTTC 4302451 29 100.0 32 ............................. CTGAAACGCCGCAGCGCATCGCGAAACCGACC 4302512 29 100.0 32 ............................. TTGTCCGACGGAACGTTGATTGGCTGTCGTAG 4302573 29 100.0 32 ............................. CCGATGGCGCAGGCGACGAAGAGGGCGGTTTC 4302634 29 100.0 32 ............................. CTGAAACGCCGCAGCGCATCGCGAAACCGACC 4302695 29 100.0 32 ............................. TCGAACTCGGCCCGCGCGGTCACCGCCGCGGC 4302756 29 100.0 32 ............................. AGGTTGTTCCACCGACTGCACCGGCACTATTG 4302817 28 96.6 32 ........-.................... GTGTCGTGGCGGCCTTCCTGGCGCAGCACAAC 4302877 29 100.0 32 ............................. CGCGCGACCAAGAGCCTGCTGCCGGGGGCATT 4302938 29 100.0 32 ............................. CCTTGAACTCGCCCAGCATCGTCGGCGACAGC 4302999 29 100.0 32 ............................. AACCGGCGGGAGGAGCTGCTGCTGCAGCTGAC 4303060 29 100.0 32 ............................. GAGCGGCACCTGGTGTTCCGCAATCTCAAGCC 4303121 29 96.6 32 ...G......................... GCCTGCGCATTCGCTTCGTCGCGATGGGCCAG 4303182 29 100.0 32 ............................. CTGGTCAGGCCCGGCGGCCGCACGCTCGACGA 4303243 29 93.1 32 ........T................C... TCGCCGGCGAGTTCACCCCCGTCCGAATAGCC 4303304 29 86.2 0 ............AT......T.......A | ========== ====== ====== ====== ============================= ================================== ================== 54 29 99.3 32 GCGTCCCCCGCACACGCGGGGATGATCCG # Left flank : ATCCCGGCGATCGAGGACGTCTTGACGGCCGGTGGCCTGCCCCGGCCGGAGGCACCCGAGGATGCTGTCCAGCCCGCTTTTCAGGATCCCGCCCCATCCGGTGAAGAAGGCCAGCGCGGATGATTGTGGTCGTGACCAATAACGCCCCACCGCGTCTTCGTGGGCGCTTGGCCGTTTGGTTGCTGGAGGTTCGTCCAGGCGTCTATGCCGGGGTCTACTCTGCCCGGACCCGCGAGATGATCCGGGGGCAGGTGGCCGACCTCATCGGTGAAGGCGATGCCGTTATCGCATGGGCAGCCGCCAACGACGCCGGCTTTGACTTCGAGACGTTCGGGCAGAACCGCCGCATGCCGGTCGATTTCGACGGGCTGAAGCTGGTGGCGTTTTCGCCGCTCGCCTGACCATTCTCGCGTTCTTCGACATCGTGAAAAAACGGTGATTTTTCCGGTGGTATTCCACTCGCGAAAAATCTTCATATATAACAGCTGCTTCCAGCAAGA # Right flank : ACTACCGAACCACCGTGTCCGCGCGAGGTGCCCTGCTCACCGCCGACAATGACGATTCCGATGCCTAGCTCGCTGCTATCGAGGCGCGGCATTGATCTGAAGGGCTTCAAATGGGTTGTGCAAAGGACATCGACGCCACAAGTTTCGAAACACGGTCTGCTACAAAGAGGCGAGGAGACTAGCAGTTAAATTATTGATATCATTCGAGTAATTTTTTTGTAGGCGTTTCCCCCCCTCTCCGCCACGTGACCCGGCCCTCTCCGGCCTGACGGAAACTCGCTGGCTTTCTCCCGGACAGACTCCGGGCGGCCTGTCCGGCATGGACTGCCGCGGCCTTCGCCGCTGAACTGCGGGCCGTCTCCCGTCGCCGGGGTGAAGCGTTCTCAGGAGTTCCAGAGGCCGGCGTCGACGTTGATCGTCTGGCCGGTGACGTAGGCGGCCCCGTCGCTGCAGAGGAAGGTCACGACGGCCGAAACCTCCTCCGGCGTGCCGAACCGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTCCCCCGCACACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACACGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5183311-5181861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061080.1 Mesirhizobium sp. NIBR3 strain N3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 5183310 36 100.0 29 .................................... CTCACCGCGCAGAATACCCTTCAGCCCGC 5183245 36 100.0 32 .................................... CCTGCTCGGTCTCGGTGCGGTTCCAGAAGTAG 5183177 36 100.0 29 .................................... CTTGGCGCCACGAGGTGATCGCAGGACCC 5183112 36 100.0 31 .................................... AACGTCCGCACATCCTCAATCGAGATCGGCG 5183045 36 100.0 32 .................................... TCGAAGGGGACGCTGCTCGTCCGTTCCGCTGG 5182977 36 100.0 31 .................................... CGTTGCCCGAGGCGGAGTAGGAGAAAAATCC 5182910 36 100.0 31 .................................... GGCGCCCCAGGCGGCCGTTACCGTCGCGAGC 5182843 36 100.0 32 .................................... TGGGGCGTCGAGGGCTTCGAGGAACTGACGAT 5182775 36 100.0 32 .................................... TCCGAAGGGCAGCCCCAGCCCGTCTTGTAGGT 5182707 36 100.0 32 .................................... ACGGCCCGCGAAGAACCCCGGCCGCCGGAGGG 5182639 36 100.0 31 .................................... TTCATGGAGATTTCCTTTCTTTTCCATGATG 5182572 36 100.0 31 .................................... CAGCGCATGCCGGTAATGCGCGGCCGGATTC 5182505 36 100.0 30 .................................... GGCGGCGATGAGCAGGATGACGGCCATAAG 5182439 36 100.0 34 .................................... GCGGCGAGCTTGGTCAACGTCATTTTTTCAGCCC 5182369 36 100.0 30 .................................... GGCCAGACGATGGCATCCTTGGAGTTCGCG 5182303 36 100.0 33 .................................... CACCACGTCAGTGCGATATCGCACCCTGTCAGT 5182234 36 100.0 32 .................................... TCGTAGAGCGGCGTACCGCCGCCCATGTGCAG 5182166 36 100.0 30 .................................... TCGTGGGTGGGGTAGCCGCCCCAGTACGCC 5182100 36 97.2 32 ....A............................... GCTGGCGCACCATGCCCCATCGCTTGGTGTAG 5182032 36 100.0 33 .................................... ACGCCGTTGGCACCGACCTGCTCGTGCGGCTGG 5181963 36 100.0 31 .................................... CCAGCCTCCGCATCCCCACCGCCATGCACGC 5181896 36 97.2 0 .......................G............ | ========== ====== ====== ====== ==================================== ================================== ================== 22 36 99.7 31 GTCTGGGCTTTTCCCCGTTTGAGAGGGGATTGAAAC # Left flank : CGATGCGGGCCGAGGCCACCGCCGCCCATGTCCACGGCTATGCCGCGAGCGCCCGGCCGGCCGGCACATAGCGTCGGCGCAGGGTCCGGCCGGCGCGGTGCCGGCGACCCGGGAAGCCGATCGTGCAAGCGGGTCGGCGCGGTGCCGGCCCCCTCGGCGCGCCGCAAGCTTGTCGCGGTTGTGGTTCCCGCCGGGCCGGAGCAGCCTCGTCCGTCAGCGCGAAAGAGCTTCGGGAAGGAGGATTCGCCGGACGACGTCGCGCGCCCCGACGACCAGGCCGGGAGGGGCGCCCGCCGCTGTCCGCCGCCTCCCGCGCGCCGGCCGGCCCGCGCCCTCACCGCCCCCTTCCGCACCGCGCCGGTCGCGCCTGCGGAAGGGAGCGAAGCCCGAACGGAGAGTGAACGAATGATGGCTTTTTTTCACAAAAATCGTGGCGAAAAAAATCTTTGGAATCGCCCCTTGCAAGCTGCTGAAAACATGAGGATAAATCGAGGGGATCA # Right flank : CGCACCGGGGCCGACGGCGACGGCCCCGGCGACCGATCCCCGCAGCCGGTTCGGCGGGGCACGGTCGCGCGGGGTCTTGCCGCTGCGGCCGCGATCCCGCATAGGATTGCGGCAGGCAGGCGGGAGGAGGCCGGCATGACGGCGGACGTGCGTTTTCCGGACCTTTCGGACGCGTCGGTCCTGATCACGGGCGGCGGCACCGGAATCGGCGCCTGCCTGACGGAGGGATTCCTGCGCCAGGGCGCGCGGGTCGCCTTCATCGACATCGCCGACGGTCCCAGCCGCGACCTCTGCCGCCGCCTGGAGGCCGAGACCGGACGCGAACCGCTGTTCCTGCAGGCCGATCTGCGGGATGCCGAAGCCCTGCGGCAGGCCGCCGGGACCGCGGCCCGGCGGAACGGGCCGGTGGGCGTGCTGGTCAACAACGCCGCGCTCGACACCCGCCATGCCATCGAGGACGTGACGCCGCAGTTCTGGGACGACAACCAGGCGATCAACCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGGCTTTTCCCCGTTTGAGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA //