Array 1 17493-21842 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOZH01000064.1 Vibrio cholerae strain vm1 VMI_Vibrio_Scaffold_65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17493 28 100.0 32 ............................ AATAGTGCCAATTGAGCAAGGTCTTTAAATGC 17553 28 100.0 32 ............................ TGATTCAAGCCGTTCAACTAAACCCACTCGAA 17613 28 100.0 32 ............................ TGAATGTTCTGCATCACATTGGATCTCATCTG 17673 28 100.0 32 ............................ TTACCCTCGCACTTGGCCGAATCTAATGAGCC 17733 28 100.0 32 ............................ TATATCGGAATCCGGTTGCTTGTCGAAAATGT 17793 28 100.0 32 ............................ GACTGTTTACGGCTCTCGCCGTGTCGCCTTCA 17853 28 100.0 32 ............................ AGGTCGAAAAAGCGCGTCTTCCCACTACCGGT 17913 28 100.0 32 ............................ TCAGACACTTCGTTAACTTGAGGGGTGGAGAT 17973 28 100.0 32 ............................ CGTGGCGTCCATTGTGCCGTCACTGTTAATAG 18033 28 100.0 33 ............................ TGTATTTTCATCGACCCAAAAGGGGATCGGGAT 18094 28 100.0 32 ............................ TTTGTGGTCTATTTCGCTTCTGGCTTTAAGGT 18154 28 100.0 32 ............................ TAGCAACCACGCTAGGCACTGATGAGCAAGGC 18214 28 100.0 32 ............................ AATGTATAAACCTGAGCGCTGAAAGTAATCGT 18274 28 100.0 32 ............................ ATTCAGGCAATGAACCACTTTGAGAAAGTTTT 18334 28 100.0 32 ............................ TAGCCCCACTTGAAATGCCGAATGAAACGCCG 18394 28 100.0 33 ............................ TCAAATCCGAGTTTCTGCGTTAAAAACTGCGCA 18455 28 100.0 32 ............................ CGACAACGCCGCGCCCCAAACAGCAAGTAGAT 18515 28 100.0 32 ............................ GAGCCATGATACCGCGAGGTTCCCACGAGATC 18575 28 100.0 32 ............................ ATGACGTCTAAAATAAGGCGGGATGTCACCAA 18635 28 100.0 32 ............................ TTGTTAAATTAAATGGTGCTCATGAAGATATT 18695 28 100.0 32 ............................ TAGATGATCCGGCTTTAAGATTTCTCGAGCTG 18755 28 100.0 32 ............................ AACATTGCCCGAATTGTTCATGATTGCAATTT 18815 28 100.0 32 ............................ TCTTCTGATTTCAGCCACGCTGCACGCTCAAT 18875 28 100.0 32 ............................ ACTACTTTCGATCTCGGTGCGATTGTGGATAT 18935 28 100.0 32 ............................ ATCATGAGCAAACCGAGACCACTACTTTCGAT 18995 28 100.0 32 ............................ TGATGAAGCGCGTCGCTTCTTCATGCAGCAAG 19055 28 100.0 32 ............................ ACTCTACCGTAATTGCAAAAATTAGAGCTGCT 19115 28 100.0 32 ............................ GACATCACTGGTCGGCGCTTCACCAAGCTTAG 19175 28 100.0 32 ............................ GTAAGCTCGCCGTGGCAGCGATTGAGCCAAGC 19235 28 100.0 32 ............................ AACGCTTTAGAGACTCAAGCACAACATAAGCC 19295 28 100.0 32 ............................ ATACTCACAGCCTGTGATCATGGCGTAGTCCA 19355 28 96.4 32 ...........C................ TTCCATCCTGAACCCGTGCCACTCATCACCGA 19415 28 100.0 32 ............................ TTCACCCTCACCCTCGCCACCGGAACCACCAC 19475 28 100.0 32 ............................ TAATACGCACTTAAAGATAGCCTCACTATGGG 19535 28 100.0 32 ............................ ACTTGTGAGTCAGTTCCAAATCAAACGCGCCT 19595 28 100.0 32 ............................ TCAATGGGACAAGATCGCGACTAAAGTGCCGA 19655 28 100.0 32 ............................ TGGCACAACGGCTTGACCCGTTGCCACGTCTT 19715 28 100.0 32 ............................ CATTCGATGTAGAGCATTCAACCCATATCAAA 19775 28 100.0 32 ............................ GCCATTCGAGGCGGTTTCTGTTATTTAGGTGC 19835 28 100.0 32 ............................ AGCGCTTCACTAAAAAGCGCCCATTCGATGTA 19895 28 100.0 32 ............................ ACTAAGCGCGCTAGGCCATTGCGCCACACGCT 19955 28 100.0 32 ............................ TTTACATGCCTTTTTGCTTTCTGGCGCGTTAG 20015 28 100.0 32 ............................ TTTAGTCTTTAGTGATTCCTGCTGCGGGACTC 20075 28 100.0 32 ............................ TGCACCGTTAACAACTAATGACTTAACCCAAT 20135 28 100.0 32 ............................ GTACCGCGATGTGGTAGGCGTTCTTACCGTCT 20195 28 100.0 32 ............................ ACAAAGGTTAAGATTTCTTTGTTGCCATCGTC 20255 28 100.0 32 ............................ AGGCAAAGTGATTCTTCTTTGTTGAGTAAAAT 20315 28 100.0 32 ............................ CGTGCGCGATGACATTCTGGGATTGGATGAAG 20375 28 100.0 32 ............................ CAAAACGTATCCCAACTCTATCAATTTGAGCA 20435 28 100.0 32 ............................ GCCAATTCCGACAAGGCCGCACTCAACTTGTC 20495 28 100.0 32 ............................ TTTTAACAGCAATTCGTTGTAGTTTTCGTTAG 20555 28 100.0 32 ............................ ATTAATGCCAACGGTTACAGGCTTGGTTGTGA 20615 28 100.0 32 ............................ GGTTTCGTCTGATATGTCGCCGTCCATCGCGT 20675 28 100.0 32 ............................ CTGTACTGTTTTGGGCGAAATAATGCCCGCCG 20735 28 100.0 32 ............................ TCAATGCTGTGTTCGGCATTGTAGGGGTTGAG 20795 28 100.0 32 ............................ GAAGAACAAACCGAAGAAGAGGGCGACCCAGC 20855 28 100.0 32 ............................ ATATGGCGCTCGATTTGTTCCAAGGTAGAGCA 20915 28 100.0 32 ............................ TATTTGTGGCATCAAGTGTTTTCATGCCGATA 20975 28 100.0 32 ............................ GCAACCTGTTTGATGCATCGGAAGGTGTCAGC 21035 28 100.0 32 ............................ GATTTGTTTTTGCGCAAATGGGTTGGCATAGC 21095 28 100.0 32 ............................ ATCTGATACCAGTGAGCGATAGAGGCGAAATA 21155 28 100.0 32 ............................ TGGTGCATCCAAAACACTTAACTCACTGGTTG 21215 28 100.0 32 ............................ CATTAGCGAGTCATCCTGTAAAGAACGAGGCC 21275 28 100.0 32 ............................ GATTGATTGGGGCGCATAATGATTTATCTCAG 21335 28 100.0 32 ............................ ATTGAAATGTTCTGAACGATGAAAATCACATC 21395 28 100.0 32 ............................ AGTTGAGCCAGTTCCAGACCCTGACAACCCAA 21455 28 100.0 32 ............................ AGTTCAAAAAAGTACACAAAGCCGCCCGTCGA 21515 28 100.0 32 ............................ AGTACGGATACTCAGGTACGTTTGAAGAGTTT 21575 28 100.0 32 ............................ ATTAGTGGTGCGAAGATGTGAAATGAGCGTGG 21635 28 100.0 32 ............................ TTGGTTCAGCACAGAAACTGGACGTTTGCAAA 21695 28 100.0 32 ............................ TGTCTATGAAGTGACAAAGCGAATGATTGTGC 21755 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 21815 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 73 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGATTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4752-4184 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOZH01000011.1 Vibrio cholerae strain vm1 VMI_Vibrio_Scaffold_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4751 28 100.0 32 ............................ AGCGCACGCAATCCGTGCGCTGTGGTTCTTCC 4691 28 100.0 32 ............................ TTGTTAGCTTCACCACCCATGAGCATATCAAG 4631 28 100.0 32 ............................ GCCATCCCTTTTCGCTCACCAGAAGCCACAGG 4571 28 100.0 32 ............................ ATCGCAAAAGTGACAGGCGCATTAGTCGGCTT 4511 28 100.0 32 ............................ CTGAAAGCGCATACGGTAAGATAGCGTTTGCT 4451 28 100.0 32 ............................ TCCACCCAGAATCTACTTTTTTCACCTTGACC 4391 28 100.0 32 ............................ AAATCACGTTAAACGATGCTCGGTAAAGTTCT 4331 28 100.0 32 ............................ GCCAGCCCATTTCACCAGTGGCTTCATTACGC 4271 28 100.0 32 ............................ TTCACCAAGCGCGAGCAGAACTCTTGCGGTCG 4211 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTGTTCTGCCGAATAGGCAGCCAAGAAA # Left flank : CATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGCAGAAGTAAGGTTTGTTCGTAATCAGACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATCAAACGCAGTATGGCTAGGGCCGAGTTATTTGGTATTCAACAATCATTACCAGTAACGAATGAAGACCGTGTCATCGATAGTTTTCATCGAATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACAAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCATTTTGACGAAGACTCTTTTTTAGTTCAGTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAAGGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTATA # Right flank : AGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCCATTTAAGAACTGCAACGCACTTTTGCCCCTAAGTTTGTTTCCACGCATTCGCTCTAACGACAGTCTAGCTGATTTTGCTATACTGCAACTAATCAAAATCTTCTGTCAGGTTGTATGCGATGAGCAAGAAAAAGTTGACCGAAAAAGTGCTGTTAGAAGGTATGACTCCTTATAATACTCACAGTGATTTGCTCGCCAAGACCGAAACAAAGACTGATTGGATGTCTTTCGCCGACGAGGTTGAATTGGTTACACATGATTTTATGACTAACCGAAATGAGGTTTTCGATGAGCCTAGTTCCGATTTGGTGAACCCAGATATTTTTCTTTCAAATCTCAAATTAGCGCTTGATAACCTTCCAGATGGTGATATT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //