Array 1 2984-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHD01000045.1 Vibrio cholerae strain N2773 NODE_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2983 28 100.0 32 ............................ TAGAGCTTCCTCTGTCCGGCTTTGTTGGTGAG 2923 28 100.0 32 ............................ TTTCTTGGTGTCCAACTCGACCACTGACGGCG 2863 28 100.0 32 ............................ AGTAAAATTACAAATTGGTGACTTGGTTAGTG 2803 28 100.0 32 ............................ TCCCACTCTGAAACCATTTTATTGAAGTGCTC 2743 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 2683 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 2623 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 2563 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 2503 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 2443 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 2383 28 100.0 32 ............................ TACATGGCATTCATGAGGGACGGCAAGCTGAT 2323 28 100.0 32 ............................ GTTGTACTCAGTTTCATCGTCCGTAAACATGT 2263 28 100.0 32 ............................ AAGTACATAGCCAGACATCATCGAACCACTGG 2203 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 2143 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 2083 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 2023 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 1963 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 1903 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 1843 28 96.4 33 ...........T................ AGATAAGCGTTGTTTAAGCGGCTGCGGAACACG 1782 28 96.4 32 ...........T................ ACGCTATTTGGCGAATTCGTCCACGTAAAAAC 1722 28 96.4 32 ...........T................ TTCGCTTAGTTGAGTTTGAGCAAGATAAACAA 1662 28 96.4 32 ...........T................ GTTAAGCGTGGGTTATACATTGTTAATGGTCG 1602 28 96.4 32 ...........T................ ATAATACAACAAAACTCGAGTAACTCTAGCAA 1542 28 96.4 32 ...........T................ ACCAGTGGTGAGCTGAAGCATTGAAGTACCTT 1482 28 96.4 32 ...........T................ GCTTCGATCAAGTCAAAATCGAACTGGTTTGT 1422 28 96.4 32 ...........T................ AGCTCATCTAACTCTTGCCAAACTTCTGGCTT 1362 28 96.4 32 ...........T................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 1302 28 100.0 32 ............................ GTTGAAATACCATGCTTTTTTTGATCTCGAAT 1242 28 100.0 32 ............................ TTGCTGGCTGGTTATGTGATGCCAAACATGTT 1182 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 1122 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 1062 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 1002 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 942 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 882 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 822 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 762 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 702 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 642 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 582 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 522 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 462 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 402 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 342 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 281 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 221 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 161 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 101 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 49 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AAATGCATATTTCGGAGCATTCCGATCAGTCATTTCGGTATTATCCGATCACCCATTTCGGTTTAAACCGATCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //