Array 1 297109-295370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLUR010000001.1 Pseudomonas aeruginosa strain PASP048 NODE_1_length_589644_cov_13.0282, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 297108 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 297047 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 296986 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 296924 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 296863 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 296802 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 296741 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 296680 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 296619 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 296558 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 296497 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 296436 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 296375 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 296314 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 296253 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 296192 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 296131 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 296069 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 296008 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 295947 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 295886 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 295825 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 295764 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 295703 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 295642 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 295581 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 295520 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 295459 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 295398 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307408-306281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLUR010000001.1 Pseudomonas aeruginosa strain PASP048 NODE_1_length_589644_cov_13.0282, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 307407 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 307346 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 307285 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 307224 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 307163 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 307102 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 307041 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 306980 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 306919 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 306858 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 306797 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 306736 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 306675 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 306614 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 306553 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 306492 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 306431 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 306370 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 306309 28 79.3 0 A..........A..C.....-..A....T | C [306300] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //