Array 1 67471-67645 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZNH01000001.1 Nostoc sp. PA-18-2419 strain JC1668 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 67471 30 100.0 41 .............................. TCGTATCAGCGGCTAAATGCCGCGTGTCGTGGTGTGTTTCC 67542 30 96.7 44 ...............G.............. TGAAGATTCCTACAGTAGCGTTGAACTATTGTTTAATGGTTTCC 67616 30 93.3 0 ................A..A.......... | ========== ====== ====== ====== ============================== ============================================ ================== 3 30 96.7 43 ATTAATTCCGATTTAAGGCGATCGGTAAAG # Left flank : CGTACCACATTAGCAGGATTAGGCTTAGGTACTTTGGCAAGCTTCTTACCCCTAACGCGCTATTTCGGACATGAAGAATTAGAGTCAGTCTTAAATACTAATTTTTCAGTTGTTTTTCTGTTAATTTTAGCTTTGGGTAAGATGGCATCTATCAGCATTACAGTTACTGGTGGGTGGCGTGGCGGTTTCATTATTCCCTTATTTTTTATCGGTACTTGTATTGGTAAAGCAATTGCAATTTTAATTCCGGGGCTGAATCCTGCACTAGCTATGATTTGTACAATGGCAGCTATCAATGCAGCAGTGACACGCACACCCATAAGTACGACTTTGTTGTTAGCAAAATTAGCTAATTTTAGTCCGATTACGCCAATTCTTTTTGCTAGTTTGATTGGGTTTTTTCTCGCACCAAAAGTTCCCTTTATAGCTTCTCAACTTAAATCCGAGCAATCTCTTGAAGAGATACAAAGTTAAAAAACTTTATCAAAAAATATGTTTAT # Right flank : GATTTCGTTCAAGAGCCTTTGCCCCGTAAGGCTTTCAGCCACCAAATCGACACACCTCTGAAAAAGATTATATATCTTGTGCGAAATTAAGTAAAATACATACCTCAAACCCTTGTCCTGTAACCCATCGACACACCTAAACGAAGAATATGGGGTTTTGGGGATTCGATGAGGTGTGTAGATGAACATCCAATGAAGATTTTACCGGTATAGTTGGGTAAATTTTGGTATTTTTGGTAGGATTCTACCTAGCATCAATTTTACGAAAAAACTCTCAAGCACCTTTTCCATGAAAAGAAGACAAATTCTTGGCTTCCTGGGTATAGCAATTGCTGGATTACTGGTAGCAATTGCTATACCCTTAGTTACTCCTTCTCCCGTAATTGCCCAGTCAAACAACATACTTGTGTCAGCCGCCGCTAGCTTAAAAGATGCGATGGAAGAAATCAAGCCTCTGTACCAACAAAGTAAATCAGATGTGAATATTACTTATAATTTTG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATTCCGATTTAAGGCGATCGGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 125366-124959 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZNH01000009.1 Nostoc sp. PA-18-2419 strain JC1668 scaffold9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 125365 36 100.0 40 .................................... ACGAACGCGACGCCCGCCGGCACCAGCCAGATGCTCTTCC 125289 36 100.0 38 .................................... GGTAAGTAATTTATCTACATCATCTACTGAACTAATAG 125215 36 100.0 39 .................................... TTCAATTACCAAAGCACATCTTTTGTTAAACGAGTAATA 125140 36 100.0 35 .................................... CATTAGTTTCAGCTTCAAAATTAGCTATACGAACA 125069 36 100.0 39 .................................... AAACCATAATGTCTAACTCTTACCGCATTTTCTCTAAAT 124994 36 97.2 0 ............G....................... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 99.5 38 GTCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Left flank : ATTGTTTTAATTTGCGAAGGTTGTAAAAATTTCACTACAGCATCGCCAGCTGTGGCGTTGACAAAGCTGGCGACGGTCACCAAAATTGTATTGATGATTACTGCTGCTAGTCCCAAAGGTGCTATCGACAAGATAATCAGAGTGATAGTGCCATTGAGTAACGCTACTCCAAAATTACGGATTAATGCAGCGCGAGAAGAGATATACATATATTTGATGTTTGTTGTAGTTTTCTCCATACCTTAAAGTTACGGGCTGGTTTCAAATTATGCTAGTGGTTTCATGCGAATGACCAAATTTACTAAGTTTTTTGACATTACCTGCGGCGGGGTAGGCAAAACTTGGAAATGCCTATGTTCTCGTTGACCCCGCCGATGTCTTACTGTACAAGGATTTTGACGTTTTTATGTTTTGTGAATCAGGTGAAAATTTCTCTATTCTCCAACCCCGTCGCAAATCGCCTCTGGACATCAAGCAGCATAGGGGTTTAAATAGGAGGG # Right flank : TTAAGTCTTATGTATTTGAACCCAGAAAAATTAAGGAAAGTCGCTTCTCTATTGTAGAAACGGCGATTTATCGTGTCTGTTAACTAACACAGTAATAGCAGCAAAACTATTAACACCAATAAGGGAATTTTCTTGTAACCACTTTAAATCAGAAGCGATCGCATTTAGATTTGCGTAAATTTTACCGCACAATTTCTCCATCAAGGCGGTAACTTATTCTAAAGAATTACCAAACTCAGGAATCTTACCAAAATGGTTTTTAAGAAACTCGGATGAGTAGTTTGCAAATTCCCAATTCCCGGATAACGAATTATCAGAGAAATTAAATGCATCAAGCATTCAAAATCCAACAGCTGACTGTAGTCATATAAAGTAATCTGGGAATTGCAATTTTTAGTGAAAAGGGTGGTTAGAAACCGGGTGTAAACATGTAAAACTTAATCCTTGTGGATTTCAAATTCTAAAGTTGGGGTTTGAGAAAGTAAAAGCTTGTTTTACTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 52810-53066 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZNH01000038.1 Nostoc sp. PA-18-2419 strain JC1668 scaffold38.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 52810 37 94.6 36 ..........A...G...................... TTTTGCGGCATACAACCAATCTTTTTTTTCTCTTTT 52883 37 100.0 35 ..................................... TGTGGGCATGGGCACTTGTAACAGTAGTAGCTACT 52955 37 100.0 38 ..................................... TGGCAGGGCGAGACTATCGCCGTCAAACTCATTCGGCA 53030 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.7 37 CTTTCAACCCGCCTCTGGCTGGGAGGGGTATTGAAAC # Left flank : GATATTGATCAAGGTTTAAATGCGATCGCTTGTTGTGAAAACAGTATGTATTTTAGTCAATTAAAAACAGCTGTAAATAGTGTTATACTATATAATTATATTAAAGTTTTGACTAGCAGCCACTAGCGGGTGTAATTCAGTGGTAGAATGTCACTTTCCCAAGGTGAACGTCGTGGGTTCGAGTCCCATTGCCCGCTTTTAATATCTGTACATTAACTAATTATTTGTCACTGTTAACAGATTATTGTCATTTTTAACAAATTAATGTCAGGCTTAACGAATTAATGTCTTCTTCAACAACCAACTTCCCTTTATTCTATGCTGAGCCTGAAATTATCAACTCAAACTTTGATCTAGCCTGTACAAGAATAAAAATTGGGAAGGTGACATTCCTTTCAACCCACCTCTAAATTTTGAAACCTTACATAATAAAGTTGGCGTTTAGCTGGGAGAGGTGTTGAAACACTCCTTCTTCAATAACTTTCCTGATATTCATCCGG # Right flank : CCCCTGCGCTTCAAACCCTAGATTTGCCAATACTTCTGAAGCATTTTTGTCACGTCTCCCAAAATCGCCCCTCAGTTAACACTAAAAAAAGTAAATTAACTGACACTTTAAAGGCTATAAACCTTATTAAACAAGCGATTTAAAGTTTTGGCAGGAGTCCCAGGGAAATCGCCCCCGCTTTACCATGCCAAAAAATAATTGAGGTGGGTTCCTCCTTGGTCGGAGGTGATTGGGTAGCCACCACTGCGGTAAACCCGCACCTTTATTACTGGGGGCGCACCTAATTCCTATCCACAAGGGACAGCAGCATCAAGGTGGGCAGCTACTAGGGTCAGAAAGCAAGACTGTTTAACAGCAGTCAAACTAACCAACATTTACGCAGCACAGAGACTTATAACAAGCATGAACTGCGGCGCTATTGAATATTTTCATTCTATTGTCAAGGTTCGGTGTTTTGTCAATCAGTTTATTTTGCGGGAATGGTAAGCAGCGATCGCTTC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCTGGCTGGGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : NA // Array 1 42641-43546 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZNH01000008.1 Nostoc sp. PA-18-2419 strain JC1668 scaffold8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 42641 36 100.0 36 .................................... GCCGCCAATCCCATGCTTGGCGAACACACGTAGAGA 42713 36 100.0 40 .................................... AACCCGATCTTGGTTGGGAGGACAACCAAGGCAAAATCGC 42789 36 100.0 38 .................................... TTTTTTTTAACTCAACCTGTTGCTGAACTTGGGGTTGT 42863 36 100.0 36 .................................... AAAAATACCCATGATCCGTCAATACCACCAGAAGCA 42935 36 100.0 36 .................................... CTAAATATTATTTAGTTTTTTGGTCTTTCGCTTTTT 43007 36 100.0 31 .................................... AACCAAGGTCTACTCCTTCATTATCATCTTC 43074 36 97.2 41 ....T............................... TTCTTGGGATTCTTAGGCTTTATTTCCTACTTATTCTTAAG 43151 36 100.0 35 .................................... AAAAATGCGACCCCTTCGAAGCACCTCAGAACCAC 43222 36 100.0 35 .................................... TTTACCCCCAAGTCATAGACACGATCAAACGCTGT 43293 36 100.0 38 .................................... GGCCTAGGCGTCACTTTCACAACCTGTGCATTCATAAT 43367 36 100.0 35 .................................... CAACTGATAAAGCAGCAGCCAAAACTTGCTTAGCC 43438 36 100.0 37 .................................... GTCATGCCGAAGACACCCAGTAAAAACAAAATCATTG 43511 36 91.7 0 ......T...............C......C...... | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 99.1 37 CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Left flank : GCCAGGGCCTTCCAGTCCCTCTGGAAAACTAATTAATTTCAAGTAATCTGGATTTGCGAGGAATTGTTTTGCTGCTAACAATCCACAATACTCCAAGTTTGATAAATTCTGGCTTCTTTGCCAATCAAACGACCATTGTTGCCATCGTAGTATTCGGGGAATTTATGTTCAAATAAACGACTTTTAGCAATTGCGATCGCTTCGTCGAAACCTGATATTGCACCTGTAATTAGCGCATTCTTCCCCTTTAATCTTATTATAAAGTTTGTACAACGCCAGTGTTGACTTTTGACTCTCAAAGGGAACTTTCAAATGTTCATCGACGCATCTCGCCAAATCGCCGAAACCCTATATTTTTCGTTGACATGCGTCGATGCCTTACAGCACAAGGATTTGAAGTATGTATTTTACTTAATTTTGCACAAGGTATATAATCCTTTTCAGAGATGCGTCGATTTGGCGGCTGAAACCCTTATGGGGCGAAGGCTCCTGAACTAACT # Right flank : CGAGAAGCGATGATTATAAATAATTTGGGATAATTCTCTTTTGTAAGTCCTCAAAGCACCTTACAAAAATCTCTCAGAATTTGTACAAACGTCAAAGTGTTTTCCAAATGAATATTATGTCCTGCACCACTAATTATTTTTAGCTGGGCAAATTTACATGTTTTAGCCATTTCTATATTTATAGATATAAATTTTTCATCATATTCGCCAGCTAATAAAAGCATAGGAATTGTATTTTCTGCTAACTTAGACCACAAATTAGGCTGGCATCCAATACCCATGAAGCGCAATGATTTATCTAATTCTTGCGGATTGTTCTGCAAGCGATTTTCTAGCATGTTGTCATATTGTGGATGATTTTTTATATAACCAAAAATTGCTTGACTGTACCAATTTGAGAGAAAATCAGCAAAATCAATTTTAGTAGTAATTCTTGTCAATTTCCTGCCTATTTGCGTATCACGTTTAATTCGTTCTAATTGTTCTGCTTCTGTTGCCAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //