Array 1 1678044-1676888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069599.1 Dickeya dianthicola strain 16MB01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1678043 32 100.0 34 ................................ AGGGAAACCCGGCGAGGCACGGTATCGACTGGAG 1677977 32 100.0 33 ................................ TTCAAATACAGTTCACATGCAAGATGCAGCTTC 1677912 32 100.0 35 ................................ TTGAAATCATGGACTTCGACAACACCGCATATCAA 1677845 32 100.0 37 ................................ GATATCAGTCTGACTGAAGCCAGATGGGTCACCAGCC 1677776 32 100.0 35 ................................ AGTATTTAGTGAGGCTGAATTCAGCCCAGATGTCT 1677709 32 100.0 34 ................................ CCAGACATCGCTGAAGCTGCGCTGAAGACCGAGA 1677643 32 100.0 34 ................................ TATTAGAAAAGTCCCTTAATTAATCCCTTACGAA 1677577 32 100.0 34 ................................ AATACCATGACCCGTTTGGTAAACAGCATCACTG 1677511 32 100.0 33 ................................ CAGTGCCCGTTAATGTACGTAGTCACACGGTTG 1677446 32 100.0 35 ................................ TTTTTGAAAATACTGCTTGCTTCTTTTTGTGAGTG 1677379 32 100.0 34 ................................ TATGACGCTGCTACCGCGTACTACAACGCGAAGG 1677313 32 100.0 34 ................................ CAGTCCAGTCGGGGGACACGACGGAAGCGACCTT 1677247 32 100.0 34 ................................ CAACAAGTGGGACATTACAAATAGCAGTGGGCAG 1677181 32 100.0 34 ................................ CGCGCCATCCTCTCCGCTCCCGGCAGACGTGCGC 1677115 32 100.0 34 ................................ TCGTTAATTCTGTCTGGATGTGCATCCTTTAACG 1677049 32 100.0 33 ................................ TATCTGGGCAGGTAGCATCGATGGGGTAGCAAC 1676984 32 100.0 34 ................................ ACCGATTGCGCGACGATCCTGAACATACTCCTTG 1676918 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 99.0 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACAAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAGGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTAGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4025580-4025011 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069599.1 Dickeya dianthicola strain 16MB01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4025579 28 100.0 32 ............................ GCATCGTTCAAACACACGCTATCTCTGTTCGC 4025519 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 4025459 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 4025399 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 4025339 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 4025279 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 4025219 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 4025159 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 4025099 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 4025039 27 89.3 0 .......................-..CG | GG [4025016] ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4034295-4035765 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069599.1 Dickeya dianthicola strain 16MB01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4034295 28 100.0 32 ............................ TCCGGTGCTCTGAGTCGTTCGAGTAGCTGGAA 4034355 28 100.0 32 ............................ TATAAAAGAGAGTCGAGCGGTGAACCACATCG 4034415 28 100.0 32 ............................ GAGAGGACTGAGAGAGCGTACCCACGCAATCC 4034475 28 100.0 32 ............................ CATATCCATACCCCACCACCCCGGCGCGCAGT 4034535 28 100.0 32 ............................ GTATTCTGGAGCGCCACCAGTGGCGTGGAATG 4034595 28 100.0 32 ............................ AGGAAGTTGGCGTTGAACTGCGTGGTGATCCT 4034655 28 100.0 32 ............................ TGACGGCGGGGATCGAGGTCGGTGTGTTGCGC 4034715 28 100.0 32 ............................ GTTACGTCGCCAACCGGCGACGCTTGGAGTTC 4034775 28 100.0 33 ............................ TCCTCGGTCAGACGCTCATTCTTCGGGTCATCT 4034836 28 100.0 32 ............................ GTACGGTGCCCTGAGTCGTTCGCGGTCACTCG 4034896 28 100.0 32 ............................ GAGTGTACAGTGATAGGTTGACGGGTAGATTC 4034956 28 100.0 32 ............................ GCTAGGGAACTAAGTACAGTACACGAACTCAA 4035016 28 100.0 32 ............................ ACACCCGAGAGACGGCACGCACCCACCAGGAC 4035076 28 100.0 32 ............................ TCCTCGTTCGTTTCTCTCTCTCTATAGTGACA 4035136 28 100.0 32 ............................ ACAAGGACAAACAGCGCGCGGCATTCAGTACT 4035196 28 100.0 32 ............................ CGCACACCTCCCGCACACCTCCCGCACACCTC 4035256 28 100.0 32 ............................ CGAACGAAAGGCCACAGGTTGCTGCGTATGGT 4035316 28 100.0 32 ............................ ATAAATCCACCGTGCCGGGCGGTCTGGTAAAG 4035376 28 100.0 32 ............................ TCCAGATTGCGTTCAGAGAGCTTCGTAGCCAG 4035436 28 100.0 32 ............................ TGTACCTGCACAGCACCGACGTACAGATAAAT 4035496 28 100.0 32 ............................ AGCGGCGGCATTGAAGTACCGATGAATACAAC 4035556 28 100.0 32 ............................ TTTAATGACACGGCCAGTGTTAATGTTATTCA 4035616 28 100.0 32 ............................ TTAACGGACGGCTTAACGCGTTGGCCGTTTGG 4035676 28 100.0 33 ............................ ACGACAAAAACCCGGCAGGAAATGCGATCTCGC 4035737 27 85.7 0 ....................G..-..CG | AG [4035755] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //