Array 1 29934-27969 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDHX01000039.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29933 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 29872 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29811 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29750 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29689 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29628 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 29567 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 29505 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 29444 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 29383 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 29322 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 29261 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 29200 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 29139 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 29078 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 29017 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28956 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28895 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28834 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28773 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28712 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28650 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28547 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28486 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28425 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28364 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28303 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28242 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28181 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28120 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 28059 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27998 29 96.6 0 A............................ | A [27971] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47558-46065 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDHX01000039.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47557 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 47496 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 47435 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 47374 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 47313 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 47252 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 47191 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 47130 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 47069 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 47008 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 46947 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 46886 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 46825 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46764 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46703 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 46642 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46580 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46519 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46458 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46397 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46336 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46275 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46214 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46153 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46092 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //