Array 1 209955-209087 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031553.1 Pasteurella multocida strain EB168 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 209954 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 209894 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 209834 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 209774 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 209714 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 209654 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 209594 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 209534 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 209474 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 209414 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209354 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209294 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209234 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209174 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 209114 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 764602-763255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031553.1 Pasteurella multocida strain EB168 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 764601 28 100.0 32 ............................ TTACCTTCCGTCATTGTTGAGCCTCCGCTAGT 764541 28 100.0 32 ............................ GCTACAAGCAAGCGACGATAGTTTTAATTTTA 764481 28 100.0 32 ............................ AAAGCCTATGAACACACAACCCTTGCACAAGT 764421 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 764361 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 764301 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 764241 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 764181 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 764121 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 764061 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 764001 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 763941 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 763881 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 763821 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 763761 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 763701 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 763641 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 763581 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 763521 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 763461 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 763401 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 763341 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 763281 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //