Array 1 447-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKP01000012.1 Actinomyces oris strain CCUG 34286 CCUG34286_contig013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 446 29 100.0 32 ............................. CAACATGGGCTTCCTTTCCACCCGGTTTAATG 385 29 100.0 32 ............................. TTTATCGGGGAGTTTCTCAATGAATTGGTTGA 324 29 96.6 32 ............................C GATATTCGCGCGCAAAATAGTGTGAGCACTCA 263 29 96.6 32 ............................T TGCTATCACTAACGCCATTAAAAGGGGTGAAC 202 29 100.0 32 ............................. ATATGGTGGGCACTTACGTACCCACCATATCA 141 29 100.0 32 ............................. TGAGGACTTGCACCGCCTTTCCACTGATGCAG 80 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCAGCGTGCTGTAGCTGGTGGGGCGAACTACGCCGGAGAGGACGCAGGAGGATGGTAGTTCTGGTTCTCTCCGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACCCGCTGGTTGTTAGAGGTCTCTCCTGGGGTCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGTTGTGGGAGCTGGTGCGCGCGTACATCGGGGAAGGGCGAGCTCTACTGATCTGGTCGGTGCGATCCGAGCAACGGTTCGAGATCGCCTCCCTGGCGCACGAACGTGAACCGGTCGATATCGAAGGGTGCCTTGTCATGCGCACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGACGCTATCGGAACTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGAGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : CCGGTACTATAAGCTAGCCCTGGTCTGACAGGCGTAAACCCCGCGCGAGCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18414-17740 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKP01000027.1 Actinomyces oris strain CCUG 34286 CCUG34286_contig028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 18413 36 100.0 36 .................................... CGACGGAGTATGTGGTCACCCAGCCGGGCCGGGACG 18341 36 100.0 34 .................................... TCCTTGATGTCGAACTCGCTGATGACCACCCCAT 18271 36 97.2 36 ..C................................. CGGGTGGGACGGTGCCGGGGAGTCGATGCCTTCCTG 18199 36 97.2 36 ................A................... AGGTCCCCAACCTCTAGCATGAGCTGTGTGATCGTC 18127 36 100.0 33 .................................... GGTGAGAAGACGTCAACCTCGACGCCGGCACAC 18058 36 94.4 35 ..........T................T........ AGGACGATCCAGTCGGACGGCTCGTAGTAGCGGGT 17987 36 94.4 34 ..C..........T...................... TTCCTTCTCCTGCCAGAGGCCGCGCTCGGCAGCC 17917 36 94.4 35 .....G.......T...................... ACCACTCTGGTTGAGGTGTCAGACAGCAGTCCCTC 17846 36 97.2 35 .............T...................... GCCACCACCATCCACCGCGCCCAGGGACGCACCGT 17775 36 94.4 0 .........T...................C...... | ========== ====== ====== ====== ==================================== ==================================== ================== 10 36 96.9 35 GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Left flank : TTACAAGGGAGTGACGGTGCGCTGATGCGTGATGATGTCAGACGTGTTCTCGTGGCCTACGACGTTCCGTCCGACCGACGCCGGACGCGGGTGGCGAAGACTCTGCTGAAGTACGGGGACCGCATCCAGTACTCCGTGTTCGTCGTAGATGCGGCGCCGGCCAAGCTCCTGCGGATGCGAGGCGAGCTGGAAGGAGTCATCAAGACGGACGCGGACTCCGTGCTCCTGTGCGACGTCGGCCTGCTGTCCTCCGTCGATGAACAACGATTCTCCTACGTGGGCCTGACCAGGACGATCACGCCGGAGGGGCCGCTCATCGCCTGACGCGAGTGCTCCAGCGCTCGAGGATCCCCGGGCAGCGCTCGCAGCGGCAGAACGTTGAAACGGCGCGGAATCTGTGAGGCAGGGTGAGGGGTAGGGTGGCTGAGCGAGAGTCTAAGCACGGAGCGCTCGCAAAGCAGCCTCAGAGGGGCTTGGCGACGGGCTATACTGAGCGGACC # Right flank : AGATGGGGATCGATATGCCTATCGCGGCTATTGATCCCCACCTACTGCTCTTTGTGCGTCACCTTCCAGGCGTGCCTGGCCCCCTCCAGGGCGGCGGGCAGGACGGCGAGCAGACGCTCGACCTCGTCGGGGCTCGTCTCCCGTCCTAGGGAGCAGCGCAGCGTGGAGCGGGCCGGCCCCTCATCGAAGCCCATCGCCAGGAGCACGTGACTGGGCTGGGTGACCCCGGCATGGCAGGCCGACCCCGCCGACGCATCAACCCCCGCCAGGTCCAGGGCCATGAGCAGCGCCTCGGCGTCGGCCTCCTCGAACCACAGGTGCGCCGTGGAGGCCACATGATCGGCACCCTCCGGCAATGTGGCGTGAACACCCGCAAGCGCCCCAGCGCCCTCCAGAATCCGGCGCCGCAGCGCCGCCAGCCGGGACTCCTGCTCCTCCCTCTCGGCGACAGCCAGCTCCACCGCCAGGGCCAGCGCCCGGGCCGCCACCACGTCCTGCGT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 11547-11396 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKP01000040.1 Actinomyces oris strain CCUG 34286 CCUG34286_contig041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11546 29 100.0 32 ............................. CCTGGTGGAGGCGGCACCCTGCCGCGCACGAC 11485 29 96.6 32 ....................A........ AACACAGCCTCAGCGGTCGCGGATATAGTCTC 11424 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCTTCTTGGTTGAGCTGGCTAGTCACCAAAACTCTCTCAAGAGCAAGCCGCCACCCTATCTAACGACACACCCCCTTTTAAACACCCTAAACACCCCTATGAATAAGCCTCCATGATTGGAACACACTTTGCAGATGAGCCAA # Right flank : AGAGCATTTGCCCGAGGAGGGGGAGGGCCCTGTGAGCCCTGCGCGGGTGGGAGAGTGGGAGAACGGCCCGTGTGCTTGAGGTGGAGTGACCGGCTCATGAGTCCGGGCGGGGTGCCTGGACTGGTGCCCACCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGATGCCTCCGTTGTGGCGGACCCGGCTGCGAAGGAGCCCACCGCCACCGTCGAGAAGGTCACTGAGACGGCCACGGGGGCGGGCGAGGTCTGACTCAACACGCTCAGTCGATTAACTTTACAAATACATCTGGTGTGATGCAGGATAAAGCCGTTGCTCGGCCACCAGGGTCTGGTCGGGCAACGGCGTGCTCCTGTTCCCCCAGGACCGCCTCTGTCATCTCCCTAGCCGGTACTCATCAGGCCGCCGACACGGCGGTCTGAGGGGCGTGCGCGTGTCCCCTCCCTGGGTGGGGCTGCCGGCACTCTCATTAAGAGGTATTGACAATGAGTGTCA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31-570 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKP01000037.1 Actinomyces oris strain CCUG 34286 CCUG34286_contig038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 31 37 100.0 36 ..................................... CTTGGAATTGATCGTGCTCATCTATCTCACCTCCTC 104 37 100.0 30 ..................................... TGAGAACCTCGCGCCTATATGCCCTAACGC 171 37 100.0 36 ..................................... TGGTAACGAGAATCTCATATTCGGCAACGGTGCGGG 244 37 100.0 36 ..................................... CCAGTAGTCGACCTCCTTCTTTCCGTTGACGACCTG 317 37 100.0 35 ..................................... GAACCTCCGAGCGACACCCGAGTGGACCCCAATCA 389 37 100.0 35 ..................................... CGTTGTTCCTTCTTTGCATGGTATCTCCTTCCATG 461 36 97.3 36 ................................-.... CATTTATCCACGCCTCGGTGGCCCTGAGGTACTCCA 533 36 78.4 0 AC........C.............-.......T.CGG | CT [560] ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 97.0 35 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GGCGCAACGACGCCGTTCCCAGAGGCAGGGG # Right flank : GGGCTTGCCGTGAGGTGGTTGCCAACAGCGCCAGAAAACGGCCAGTCCAACCGCCAGTCCCTTGAACAGGCCCTCCAAGCCGACCCGAACCACCCCACCACCACGGGCGCCGTCCTCCTCGACGACCACCAAGGCCTCCACCCCAGGTGGATTCGTGCCAGGTGAGCTCGCAGGATTCCAGCAAACATCACGCAGTCGAAACGCCTACAGCGCAGGGAACGGCCAGCAGACGCAAAGCCAGGCGGCCGCGCCAAGGAGCCCAGCCGCCCGCTCGTCACCCACTCACGGGACACAGTCAACGCGTCGGCAGACCAACATCCATGTCCCACACCAGCATTGCTTCAGCGGCGACGCAGAGGCAGGGCCATGACGCCACCGAAAGAACAGTTGCCAACGCCAGCCTTTAACTTATAACTTAAGTACGTGACTACGATTCAGGAGGCCCGGCGCAGCCTAGGCGTTGCGCAGAGTGAGCTAGCACAACGCCTAGGGGTTTCTGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 2594-3069 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKP01000037.1 Actinomyces oris strain CCUG 34286 CCUG34286_contig038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2594 37 97.3 36 ..............C...................... ACGCTTCGTCTCCCAGCGTCGTTGTTCATGATGGTC 2667 37 97.3 36 ..............C...................... TTAGCCTCCCTCATGTAGGAGGACCACACGATGATT 2740 37 97.3 38 ..............C...................... AGTCTCAAGCGTGCCTGACACAGACATCAGATCGTGAC 2815 37 100.0 37 ..................................... CTTTCTGGCTTCTTCGCGCATGGAACGGCTGTCCCAT 2889 37 100.0 35 ..................................... ATCAGTGCGACCCGCGGATCCGGAACCAGGAACCT 2961 37 100.0 34 ..................................... GTCACGTAGTCCAGCACTTTCTCCCCGTTGTCGT 3032 37 78.4 0 ........A.................CCT...C.CGG | C [3057] ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 95.8 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : AGAAGCCAAGGCACGAGCACAGTCCTTTCTTCATCACTGGAAAGACAGTAAAACATCAAGGTCCAGACCAACCGCAGGCTGCGGATGAGGTGGATCGTGTGATCGAGCTCGACTCGGAGGCGGTCGGGTCCATCGTCTCCGAGCAGTGGACCATGATGACCGACGCCGACAGACAGCTCGAGGCCTTCCTGACCCACTTGCTGGACGGCCAGGCGGCTCGGCGTGGGAAACGCTCCTGACGCCGAGTCCAGAGCCCTGCTCCATCTCCACCACAGCAGGTTGTGGCCACAGTCACAGGCGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAACTGGTGGCTGAAGGTGTCTGAGGGAGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCCGGCCGGTCCCGCGGGGTACTTGCGGAGCCGGTGGCGCTCCACCCCCTGGAAATGGCGCAACGACGCCGTTCCCAGAGGCAGGGG # Right flank : GGGCTTACCGTGCGGTGGTTGCCAACAGCGCCGGAAAACGGCCAGTCCGACCGTCAGTCCCTTGAACAGGCTCTCCGAGTCACCCCGAACCACCCCGCCACCACGGACGCCGTCCTCCTCGACGACAACCAAGACCTCCACCCCAGGTGGATTCGTGACAGGTGAGCTCGCGCGATTCCACGAAACGTCACGCAGCCGAAACGCCTCTACCGCAGGAGCCGGCCAAGCAGACGCAAACAAAAGCGAGCGGCCCCGAGAAACTCGGCATCCGCCCACTCGCCGCTCATTCCTCGCCCGCCCACGAGCGGGCAGACAGTCATGCGACCAGGCGGCCGGGCCGACAACAGCCCAGCCAAGCCCGCCCCGCGCGCCGCCCCCGCTTCAGACGCGGCGCAGACGCAGGATGACGAGGCCGCCGGACAGCAGGATCGCCGCCACGGACAGCACACCGATCGCCACACCCGTCACCGGCAGCCACCGCTCCCGGACACTCTGGGCGG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCCCGCACCAGAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5014-235 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKP01000044.1 Actinomyces oris strain CCUG 34286 CCUG34286_contig045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 5013 29 96.6 32 ............................A TGTACGGCCGTGCGGGCGATCAGCAGTGCCGT 4952 29 96.6 33 ............................A GCACGGCTTTAAATGGGTGTCTGAGCACCCGGG 4890 29 100.0 32 ............................. TAACGGGCACCACCAGCAGGTGATGCCCGTCA 4829 29 96.6 32 ............................G TCGTCCAGTTTTTTCTTCGAGTCCCTAGCCCA 4768 29 100.0 32 ............................. CGCCAGGCACCCAAAGGCCCTCTACCTTTTCG 4707 29 96.6 32 ............................G CCACATTTCATAGTCAATTCCTCCTGGCTCAC 4646 29 96.6 48 ............................G GCCCCGGTCACCGTCATGGTGACCGGGGCCTTGTAAACCCCGCGCGAG 4569 29 65.5 32 NNNNNNNNN...................T TTCACTTCGCATTCCATCCGCGAAATAAAATA 4508 29 96.6 32 ............................G CCCAAGGGGCGTAAGAGCATTACCGTCATCTA 4447 29 100.0 32 ............................. GGTACGTCGTCAACTTAACTCATTGTCAGATG 4386 29 100.0 32 ............................. GTGACCATGTCGCCGGGTCGGGCGCTCCCGGG 4325 29 96.6 32 ............................T AAAGTCGTCAGTGTTGTCCTTGAACTCATTAT 4264 29 100.0 32 ............................. AACTACTCTTCTAGGAGGAAGATCAAATGAGC 4203 29 96.6 32 ............................G GGGAACGAGCCCCCGCCCCATGCGGAGGCGCT 4142 29 100.0 32 ............................. AACTACGTGCAGATGGCTCGGTCCTGTGTGTC 4081 29 96.6 32 ............................T CCACTCAAAGGCATAGGGCAACTCGGTGGATA 4020 29 100.0 32 ............................. TTCAGGCGATCTGTCGCCCGGATAGGACAACC 3959 29 96.6 32 ............................T GCCATTCAATTTCACTTCGCATTCCATCCGCG 3898 29 100.0 32 ............................. GGTACGTCGTCAACTTAACTCATTGTCAGATG 3837 29 96.6 32 ............................G CGGGTTAAACCAAATAGAATTACGGGCGTATA 3776 29 96.6 32 ............................G CGTCCAGTGACGCGTTGCCGCCCACCCGGTTA 3715 29 96.6 32 ............................A AGAATCGTTATTCCAGTCAGATCGTATTTATG 3654 29 96.6 32 ............................G GGGACACCGCTCTGCGCGTATACAGCCCCGTG 3593 29 100.0 32 ............................. GAATCAATCACTATCGATAACTTCCCGCACGT 3532 29 96.6 32 ............................T TGTCTCTGAAATATGATGCGATGCAGATTCAG 3471 29 100.0 32 ............................. ATTAACATTAAACATAGGCCACTTATTGTCAG 3410 29 96.6 32 ............................G AACTGTTCTGAACAATCAGGTAGTTAAAAGTA 3349 29 96.6 32 ............................G CGCATCCTCACGCTTCTGGGCGACCCGTCCGA 3288 29 100.0 32 ............................. CTATCGCAGCAGACAGTATCTCACGACAGCGG 3227 29 96.6 32 ............................T GTGGCCGGTCTAGCCGCCTGACACGGTCTCTC 3166 29 96.6 32 ............................T GGCCAGCCAGTAGGAAAGAGTCGAGTCCACTA 3105 29 100.0 32 ............................. GTCCATTCCAGCAAGCGGAGTAGCAGCGGTGC 3044 29 100.0 32 ............................. GTCGGGCGCGGCAGGCGGCAGTAGAGCCGCCG 2983 29 96.6 32 ............................G TCCCGCCCAGAGCGGCTGGGTGACCGAGCAGT 2922 29 100.0 32 ............................. ACCTGGGAGGCGGGGTCGACGCCCAGCGCCAG 2861 29 100.0 32 ............................. CGCCCCGCACAGCCCTCCCCTGCATGGCGCGT 2800 29 100.0 32 ............................. GTTCTGTAAGCCTCTCTGACGGCCTAGACCCG 2739 29 100.0 32 ............................. AAGGCGGTCCTCATTGCCCAGCAGCGCCAGGG 2678 29 96.6 32 ............................G ACCCACCGGGCGTCGAATTTGATGTTCGCGTT 2617 29 96.6 32 ............................T AGTATGCAGGCATACGGATTAATCCTAGGAAT 2556 29 96.6 33 ............................G GAGCTCACCATGCGCGTCAACCCCACCGACATC 2494 29 96.6 32 ............................G CGGCCATCGACGCGCTGGCGGATCGGATCGAG 2433 29 100.0 32 ............................. GGGATGCGCTGGCCGCACGACTGGGGAGGCGG 2372 29 100.0 38 ............................. GCGTGCTCAAGCTTGACGTCGAGCTGGACGGCGAGGCG 2305 29 96.6 32 ............................G AACGGGAAGACCACCCTGAGCGCCGCCATCAT 2244 29 96.6 32 ............................G GGCACCCCGGTCGCGAATCCCGCGTTCTCCAT 2183 29 100.0 32 ............................. CGTGCCATACGGGGTTGTGTAGAACCGTTCTG 2122 29 100.0 32 ............................. GGGTTTCGTGCGAATGGCTACTTTTCCGTCAA 2061 29 96.6 32 ............................T TAGTACGGCCGTAGGTGCTCCGCAGCGTCATC 2000 29 96.6 61 ............................A GGACACCAAGCTGTGAACCCCAACGACCCCGACACCACGGCCCGAAACACGTCTGGCGCGT 1910 29 100.0 32 ............................. GCAATTCGTAATGACGCGTCTCTTGACTATCG 1849 29 100.0 32 ............................. TGATCAGCCTGCGCAAGGCGGCCATTAAGTCC 1788 29 96.6 32 ............................G ACAGGACCGGAGAACGCCTGGTAGGCCTTGCC 1727 29 96.6 32 ............................G CGAGATAGTTAGCTGCGTAGTCTCGGGGGCCA 1666 29 96.6 32 ............................G ATACGGTAGGTCATATTAACCTGATACGTCTG 1605 29 100.0 32 ............................. AATAGTTCCGCGAGCGCCCTTGTAGTAGCCGA 1544 29 96.6 32 ............................T AACGTCCATCATGTCGTTCATATAGCCGCGCG 1483 29 100.0 32 ............................. GATCCTAACGTCCTGACACTTCCAGTAGGAGA 1422 29 100.0 32 ............................. GAGGACGACGCCAGGCAGGCGGCTGAGCGCTA 1361 29 100.0 32 ............................. GAACTTACCGAACCGGGTATTAGCAACGTCAT 1300 29 100.0 32 ............................. ATAGGGAGATCGGTCCAGACAGAGAAGCAACC 1239 29 96.6 32 ............................T GTATTACGGGACTTTGGGGAATCGAATAGAAT 1178 29 100.0 32 ............................. ACCGACCGCGTCCCTGGAAAGCATGAGGCAGA 1117 29 100.0 32 ............................. GAACGGGTCGCGCTTAACGAGTTCAGCCTCAT 1056 29 96.6 32 ............................T CTCATCGTTGCGCTGCGCAATGACCTTTGCTC 995 29 96.6 32 ............................G TCTTTCCGGTACCACGACTACCTACGACCATG 934 29 96.6 32 ............................G ACGGGCGCCGTAGTCCACGGAGGTGACGCTGC 873 29 96.6 32 ............................G ATCGACGCGGGCAGATTCGTCATCACCACCAC 812 29 100.0 32 ............................. CACGGGAACTGGCGTGCGAACAGATTAACGAG 751 29 96.6 32 ............................G AACTGTGCGTGACACGAATTACGAGATGGCCC 690 29 96.6 32 ............................G CGCCCGCTTCACGACCGCGCAGGCGACGCGCT 629 29 100.0 32 ............................. TGTCATCCCCAGCGGCTTAATGAACATATCCT 568 29 93.1 32 .................A..........G ACACTCGATATCTAACGTTAGGTGCGCAGATT 507 29 100.0 32 ............................. CGGCCGCAAGCCCAACGGCGGACGTGACCGCC 446 29 96.6 32 ............................G GGACGTTCAAGATTGCTAGTAATTCTACCGGC 385 29 96.6 32 ............................A GCGCGTCAATTTTCGCCAGGCCCGCCTGCCCC 324 29 100.0 32 ............................. GTGGATCCGGTGTTGGCGCCGGACAAGGTGAA 263 29 93.1 0 .....T..............A........ | ========== ====== ====== ====== ============================= ============================================================= ================== 78 29 97.6 33 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCGAGCGGGGATGATCCCCGGTAAACGGCCGTATCTAGACGAAAACGGA # Right flank : CATGAGGCTTATTCATGGGGTGTAGGTGAATGTGAGTCCGAGGATGGCTGTGATGGTTTCTGGGAAGGTTTCTAGTGGTCTTCTGTAGCCGGTGTGCAGGACTCTCCAGGTCTTGGAGGCTTATTCACAGGGCTAGCCGACTCCGGCATCTGCGCAGTTCAGAGCACCTTTGACGGATGCTGTGAATAAGCCTCTTGATGTTGGCGATGACTCGCTCGATCTTGTAGCGGATCTG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 789-313 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKP01000065.1 Actinomyces oris strain CCUG 34286 CCUG34286_contig066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 788 37 100.0 35 ..................................... TAGAACATTCATGAGGTCTCACGTCCCAGTCACAC 716 37 100.0 35 ..................................... CGCTCGACCTCCACCGAGCCAGGCGCCGTAAACCC 644 37 94.6 38 ......G...C.......................... GAAGGTCCTGAGTGTGTCGAAGCCGATCCAGCCGTCAT 569 37 94.6 36 .........T......T.................... TCACTCTCAAACTGTGAGAACTGGAGCGGCACGTCG 496 37 97.3 38 .........T........................... TGGTACACCCACCCAGGCAGCTACAGCAACCAGCCAAA 421 37 94.6 35 ...........T.............A........... TGAGGTATTCACCTCCTCTCCTCCGAAGTTTCGGC 349 37 78.4 0 ........................A.CCT...G.CGG | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 94.2 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : GAGATCGCCTTGGCGGTCCTGACCTTCATAGGCCTGCCGCTGAGCGTGTTCCTGGAGATCTGGTCCAACTGGGAGGCCGCCAAGGGTATCGCGGTCCGGCACCAGAGCATCGGCGGCTGGGACGCGGGATGGGGGTGGATTCTTGGCTTCGGTCTTATCGGGTCGGTCCTCATCGGCGGTGGGATCTGGCTGATTGTTGACAAGGTGGGCGGCCGGGTGGCTCGGCGTGGGAAACGCTCCTGACGCCGAGTCCAGAGCCCGGTTCCACCTCCACCACACCAGGACGTGTCCGCAGTCACAGACGGGAACGTCGACCTTTTGGCTTGACGTCGTTGGAAGCTGGTGGCTGAAGGTGCCCGAGGGGGCGTCGGTGGCGCTTGGCGCCAGGACGCCGAAAAGTGGTTAAATAGGGGCCGTGCCGGCCGGTCCCGCGGGGTGCCTGCGGAGCCGGTGGCGCCCCCCCCGGAAACGGCGCAACGACGCCGCTCCCAGAGGCAGGG # Right flank : GAACTTACAGTCCATCTTCATCTCCTTAACGAGCTGGACGGCCAGGCGGCTCGGCGGAGGAAACGCTCCTGACGCTGAGTCCAGAGCCCGGTTCCACCTCCACCACACCAGGATGTGCCCGCAGTCACAGGCGGGAACGTTGACCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGAATGGCCTGAGGGGGTGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAGGTGGTTAAATGGGGGCAGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCTGGAAGTGGCGCAACGAC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //