Array 1 5977072-5974900 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985361.1 Nocardia suismassiliense strain S-137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5977071 29 100.0 32 ............................. CTGCTGCCGGACGTGAAAGAACGACTGCTTGA 5977010 29 100.0 32 ............................. TTTCTCCAGGTGGAAACCGGCGGAAACGTTCG 5976949 29 96.6 32 .....G....................... AGCGAGGCAGCGGCGGTCAAGAACAGCCGGAC 5976888 29 100.0 32 ............................. GGTTCGTGCACGGGCACCGCGACCGCAGCTTG 5976827 29 100.0 33 ............................. GCCGCTCGGCCCCGGCCGGTACGAGGTTGTCGA 5976765 29 100.0 32 ............................. CCGTTCGATCGCACGGTGGTCAGTCACATGCT 5976704 29 100.0 32 ............................. CCATCGTGTCCGCCCGTGGCATGGTCCGGCCG 5976643 29 96.6 32 ..................A.......... GAACGGATCGACGCGCAGGCGCGGTGGATGGC 5976582 29 100.0 32 ............................. CCGATCGGCGCGGCCGTCAGTTGTAGATCAGC 5976521 29 96.6 32 ............................T CCGAGAGCTCCCGGCACAACTCCGCGCTGGCC 5976460 29 96.6 32 ............................T GCAAGTCCCGATCATCTCGTCTTCGGACAGGG 5976399 29 100.0 32 ............................. TGTGGATGCGGCCAGCGCCACGGCGGCCAGTC 5976338 29 100.0 32 ............................. GCCGAGACCCGCCACCGCATCGCCGACGCCGC 5976277 29 96.6 32 ............................T GTCTTGTCCCACAACCACACCGGCATGCCGAT 5976216 29 100.0 32 ............................. CCATCATCGACGGTTACACCGTTGCCCAAATC 5976155 29 100.0 32 ............................. GACAATGAGCGCGATGACGATCATCGAGCGAG 5976094 29 96.6 32 ............................T GGAACGGCGCCCGGCGTGCGGTGATGCTGTCC 5976033 29 100.0 32 ............................. GCAAGATCCTGCTGCGCGCGGCCATGCACCAC 5975972 29 100.0 32 ............................. GTGGGGTTCAGTCCGCGAGTGACCGGGTCGCG 5975911 29 100.0 32 ............................. CCTGCTCGACCTGTCCTCCGAGGCTGTGCGAG G [5975894] 5975849 29 100.0 31 ............................. TAATGGAGAAGGCCCAGAAGACCGAGTGACC 5975789 29 96.6 33 ............................T TTGGCACGGCGGAGATCGGGGAACTCGTCGGTG 5975727 29 100.0 32 ............................. CACGTGTTGACCTACACCGCGACCCAGGCCCT 5975666 29 100.0 32 ............................. AGGAATTCACGCGCCTCAACAATGTGCTGGTG 5975605 29 100.0 32 ............................. CGCCCGACGGCGCAGAGGTAGGGCTGGTCCTC 5975544 29 100.0 32 ............................. GTGAGCGTGGCGCCCACTGCGGTGACGGCATC 5975483 29 100.0 32 ............................. TTCCTGACTGAACGAGTGCGGGCAGTACAAGC 5975422 29 100.0 32 ............................. GGGACATCATGACCAAGCCCAAGCCCGACCGG 5975361 29 96.6 32 .........T................... CGCCCGAGATCGTCGGTCCAGTGCCCGTCGTG 5975300 29 96.6 32 ............................C CACAGCCAAGCAAACACGAAAAAGGCGTACTC 5975239 29 100.0 32 ............................. GCGGAACGGGACCGCGTCAGGTGTCGTGGAGA 5975178 29 100.0 32 ............................. CTGCTCTTCGACCGGCGGGACGCTCCCGAAAA 5975117 29 89.7 32 ..............T.........A...A TACGCCGCTGAGTACACCACCGCCGACACCGA 5975056 29 89.7 32 ...............C........A...C GCTCGTCGGCACCCGACGACCTATGACGCGAT C [5975044] 5974994 29 100.0 32 ............................. AAAGAGCAATGACGCACAGTGTCCGGGTTGGC GGC,C [5974973,5974985] 5974929 29 89.7 0 .G.........C..G.............. | G [5974921] ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.3 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCG # Left flank : ATACGGAGACGACTTTTGACCACCGTCGTCCTCACCGCCGTACCACTTGGCCTGCGTGGACATCTCACCCGATGGCTACTCGAAATCAGCCCAGGCGTGTTCGTCGGGAACATCTCTGCGCGTGTCCGAGAACTCATGTGGCAGCGCATCATCGAGTTCGTCGCGGAAGGGCGAGCAATCATGGTGTATACCGCACGCAACGAACAACGCCTCGCATTCAAGGTCCACGGCCACGACTGGACTCCCGTGGACTACGACGGCTTGACACTTATGCGCCGGATGACAACTCCGGACTATGTCACCGCGACCCCAGCACCGACCGCCATGACAACCCGCTCAACCAGCCAAGCAGAACACCAGTCCGAGACCGTATGGCGTCGCCGCGTAGCCCGGCGCAAGTTCAAACCCAAGTAGCGATCCCAGGCCCCCATCCCGCCCCGAACCAAAACAAACCGAATCAAAAATGGGCCTGACGGCTGCAAACAGCCAGGTCAACAAGT # Right flank : CGCACTCGATCGTGCAGGACACCACCGTCGTCGTGCTTCCACGACGGCAGGGTGCTCATCGGTAGGAATCCAGATCCCACTGGAGCCTGCTCAGCTTGCTGGACATCCTTTCGGCTCACCGCTGACTGTCGCCACGACGACGATGTCGTCGAACTACTAGCTCGGCATCGGCTGAGATCAGCAGCACAGGGCGGCGAGAAGGCGGTGTAGATGTTGTACGAGCCGTGCTGGGGACGCGAACGGACACATGCAGAACTATTGCTGAGTCCGGTCAGGAGTGTTGCGTCCCGAAGATGCCGCGGCGTTGGAGTGCGGTGCGGATGGTGGTGTGCGCCACGCCGAGGCGTTTGCCGATTCGACCGAGCGACTCGCCCCCTGACAATGGGATCGACCCCGTGTTCGGGTTGACGGTTTCCAGAACCGCCGACCCGGGCGGCAACAACCTGACCGGGCGGATGCTGGTAGAAAAGCCCGGCCAAGGCTATCTCCGCCAACTGGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5987552-5986673 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985361.1 Nocardia suismassiliense strain S-137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5987551 29 100.0 32 ............................. GACCAGCGACCGAGGAACGTGGCCAGGTACTC 5987490 29 100.0 32 ............................. CTCTACCGGCGTGAGGTGTCGGTGCGCGGGAG 5987429 29 96.6 32 ............................T TACATGTATCGGAGATATGGAAACCGCTTGCC 5987368 29 96.6 32 ............................T TCGACCAAGACCTTGCGAAGGCCAAACGCGAA 5987307 29 100.0 32 ............................. GCGAGCACGGCAAGTTTTACCCCAAGCATTGA 5987246 29 100.0 32 ............................. CAATTCTCTGACGCCGACGAGACCTTTAACAA 5987185 29 96.6 32 ............................C CCGAGTTGTTGAATGGAACCCGGTTCGCGATG 5987124 29 100.0 32 ............................. CCCTGGACAGCGGCGGCAAACGACCCCTGCGC 5987063 29 100.0 32 ............................. TCGGCTGCCGCGGAGGTCGGCAATTTGAGGGC 5987002 29 93.1 32 .C..........................C AGTGACAGGGAGGTAGGGCTGTGACGAATCCG 5986941 29 100.0 32 ............................. CGCACCAAATTCAGCGTCGAGACCGTCGCGAA 5986880 29 100.0 32 ............................. CCAGTGACGGCGCACTGACCAGGGCGGCGGCG 5986819 29 96.6 32 ............................C TGTATTTGGAATCTCTGATGACAATCCATGTC 5986758 29 93.1 29 ........................T..T. CGGATTGGCTTTCAGATCCAGATTCGTCA 5986700 28 79.3 0 ........GT-.....T........C..C | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.8 32 GTGCTCCCCACGCACGCGGGGATGATCCG # Left flank : GAGATCGACCAAGCCCGCAGGGAACACGGACTGCAATTCGCCGAACTCGTGGAAGGACTCCAACGGATCGTCCGTATCTTGCCCCTAGGGACAACAGCCTCCGTGGACCCTGCGGCTCTCACCGCTCCCGCTGAGCGACAGCTGATCGATGTAGTAGACGGCCTCGCCCGCGGCGGTGATGATCGTTCGCTGGTGAGCTGGATCAGCCGAGCGACACCGCTCGCCGGAGCCCTCCGTGTGTTCTTCGACAACATCCTTGTGATGGACAATGACTCGTCGGTTCGGTCGGCGCGTCTCGGCCTCCTCGCGAGCGTCCTCGATGCAGCGCCTAGGGGAATCGACTGGAAAGCTGTCCATCTTCTGCGTGCTGACACCACCGACACCGGTGTCGGCTCGAAGGTTTCGAGCACACGCGGTTAACCATTGCTAACACCTAGGAAGGGCGGAACAAACCGATCGAAAACCTGGAAATCATGAGGTAAACGACCAGGTCAAGAAGT # Right flank : CCAAGGACGACCGGCTGTGCAACGAACGTGACGAGTGTTGCCGCGCCTGCTGGGAGATGTGTTGCCCGTGATTGATGCCGATGTTAGAGGCATGGTCCGCTGCATGAAGGTTATTGGTGACGGGAGCGCCCGACTGTGGAGCTCGCTGGGTGAGGTGAGCTTCAGCGGTGCGAGGTAGGGCTGGGTTGGTTGTACCGCGTTGCTGTGCGTGGTGGTGGTTGGTACGTCGGGCAGGAGAACCGGTCGGTTGGTCATTTCGATGTTTCTGTTGTGGCTTGCTAGAAGTGCGCTTGCACAGTTTGTTTCGCGAGTACTGTTGCCGGAAGTCGTTGAGCTTCTGGGCATTCCGGAGGCGCCGCGAACTTGTCGGTGGGGGGTGAGACAGTGTTGGGCATTCCCGGAATTTCGGGGCGGATTCTTTCGTAAGGGGTCGGTCTTTGGTGTTGAGCGAGGCTGCTCGATCGGTGTGGGCGAAGTCGCCGAATGCTGCTGGTGAGTGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //