Array 1 1061-2724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRY01000037.1 Salmonella enterica strain CVM 43807 43807_contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1061 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 1122 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 1183 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1244 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 1311 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 1372 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 1433 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 1494 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 1555 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1616 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1677 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1738 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1799 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1860 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1921 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 1982 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2043 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2104 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2165 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2268 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2329 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2390 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2451 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2512 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2573 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2634 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2695 29 96.6 0 A............................ | A [2721] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96945-97948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRY01000005.1 Salmonella enterica strain CVM 43807 43807_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96945 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 97006 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 97067 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 97128 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 97189 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 97250 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 97311 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 97372 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 97433 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 97494 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 97555 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 97616 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 97677 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 97738 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97799 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97860 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97921 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //