Array 1 1889026-1886795 **** Predicted by CRISPRDetect 2.4 *** >NC_012623.1 Sulfolobus islandicus Y.N.15.51, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 1889025 24 100.0 40 ........................ GCTGGAAGAGGTGCAGATCCAGCAGAACCACCACTAAATG 1888961 24 100.0 43 ........................ ATATTTCTCTATTAGAAATGCTATCGTGGATTTGAGATCTGGT 1888894 24 100.0 40 ........................ TACTAGAAGGGTGGGAGTGACCCTCCTAGTGGGTTCATTG 1888830 24 100.0 43 ........................ TCTAAAATATTATATATGTCCTCTTCTTCTAATCTTTCAACTA 1888763 24 100.0 40 ........................ ATCTCTGATGTTGTTAGTGCTGATAGAATTTGTTGTAGTG 1888699 24 100.0 42 ........................ TTGCCGTGTTTGTGGTATTCTGATTCTCTTTCACTTTTTCCT 1888633 24 100.0 37 ........................ TAGGGAGGGTAGGGGAGGTATTGGGCGGAGCTCAACC 1888572 24 100.0 44 ........................ AAACCCTAATTTAAAGTTTTTAGTTACTAAACATATTCATAATT 1888504 24 100.0 42 ........................ CTCATAGAAGTTTACGATATCGAAAAGTACATTTAAGACTGT 1888438 24 100.0 40 ........................ AGTCTGTTCAACGCTCTAGCTACCTTCAAACCAAAGCCTT 1888374 24 100.0 40 ........................ ATTATGACAAATTTAAAGTTATCTTTAATTTTCGATCTTC 1888310 24 100.0 41 ........................ CTAGAAGGATTTATCTCACTTTTTATGATTATTAGACCTTT 1888245 24 100.0 44 ........................ TTTAAAGAAATTGCGAAATGGGTAGGTGCAAGGTCATTTTCTGA 1888177 24 100.0 42 ........................ CAAAATGTTACACAATTAGATTTAGTAACAATTTTAACTGCT 1888111 24 100.0 41 ........................ CCTCCTCCACCTCCTCCACGGCACATTGTGTCTCCTCCACC 1888046 24 100.0 38 ........................ AACACAAAATCAAAGTCAAACCCAAACCACTCAATCAA 1887984 24 100.0 41 ........................ ATCAGATGAAACCAAGAATCTTAGTCCAGATTTAGCCACCT 1887919 24 100.0 44 ........................ CGTGCTTAATTTATAAATTTGCACTGGATCGCGTGAATAATTTA 1887851 24 100.0 39 ........................ TACTTTGTCATTCTTATTTTTCGTTATCTGACAAATATA 1887788 24 100.0 40 ........................ TAGGTGGTTTGGCAGGAGGTCTAGGTCCAGGTGTAGCGGG 1887724 24 100.0 42 ........................ TGAAGTTTTGTCGTATATTCTTTAACTGAAAAAATATGAGCT 1887658 24 100.0 41 ........................ AATAATGCTATCGCAGAAGGGTTAGATAAGGAAATCCAGTT 1887593 24 100.0 41 ........................ TACCAAACCTCATCATTTTGTTTGGTGATTGCAAACTCTTT 1887528 24 100.0 46 ........................ TCTTCCAATCTTTGCATTGGTTGTATAATTAGTGCTTTGTCACCTT 1887458 24 100.0 39 ........................ TCTTAGGTTGCGTGTTACATTGTCTATGAGGTATTTGTA 1887395 24 100.0 41 ........................ AATTCTTTCTTTTCATTCGAAATCAGCGGTTTCACTTCTGT 1887330 24 100.0 40 ........................ TCGTCGGCAGGAATAATAGTGAGTGACCCCTGTGAGGTAC 1887266 24 100.0 41 ........................ GTATTCGGTGCTAATGCTACAGTCTCAGTAGACACTGTTTA 1887201 24 100.0 39 ........................ TTCGGGGTTGCGTGGGAAGACCCCAATACATTAATCGCG 1887138 24 100.0 40 ........................ TTTTATGCGGTCATATTCGATGATTTAAAACTCCCGATAG 1887074 24 100.0 40 ........................ ATTAATCTGTCATTTTGCGTAAATTGTGCAAAAAATGAGA 1887010 24 100.0 41 ........................ TGTAACATGAATGTAACATAAGACCCTTGGCAAAAAATCGA 1886945 24 100.0 39 ........................ TTTTAACTCTTAACACTTATTCTCAACATAGAGAACGTA 1886882 24 100.0 40 ........................ CATGTGTAAATGAAAACCTGACATTTAAATGTATATGTCA 1886818 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================== ================== 35 24 100.0 41 GCTAATCTACTATAGAATTGAAAG # Left flank : ACTAATTTTAATTTCAATTATTTCCGGGCTAGGATAGCGAAGTCGTAGAGTTTGGATTTTTAAGTTTTCTATAGCAGCTCTAGTTCCTTCCACTATGGGACTAGGAACTACTATAAGTAATTTATCCTCCTTTTGAGCTGAAGTCTCATTAAGAAGTCTTAGAAGATAAGTTTCATTAAATCCCAAAGTTACAAAGTAAGACTTCATCATTATATATGGTAATATCATAAATAAATAACTTTTGATTACTTTCGAAGAACTCCAATTCCAATTTTTATTCCCTACTATTTCCGTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTATCCTAAATTCATTATCTTTATGAAGAATTCCTTAAGATCCCGAAAAAACCCGGGAATAGTAAAAAAGATAAGAAAGAGTAATATAATACTAATGGAAAGAGTAGAGAAGAAAAACTTATAAGAAAGGGAGAAGAAAAGATTAAATAGAGGGTTAAAAAACCCTCA # Right flank : AGGGCTCATCTTAAATGGGTAAACACGGAAACATCGTTTGGTGTTATTCAACTCTTTTGAGGGAAGAATCTAGTTGAGCCTATAGCATTTCAAATTACTTGTCATTTAACTTCATCATTATCATTATAATATACAACTTTATTCTAGTGACAATGATACGAAATTTCACCGTATTTAGAGTTAAGATAGTTTTCAACAGATTTTACAAATTGCTTTATAAATCTATTAATAGAGTTAGAGTCTTAAACTCAAATTTTGCCTTATCTATAGAAGATTAATAGAACACATGGGAAAGCGAAAATGGTCTTAAGGAGGCAATCTACGCCTCGCCTTTAACAGACATGAGTTTGGAACTGTAGGAGGAGACTGAAGGTAAATTTTCTGAGCAATCTGAAGTTTGTACATTATCTAAGGATAGAATGCCTGCCTTCTTCTACAATATTATCTATATGGTCTGAAGTTCTGTATGCTTGTTCAAATTTTCCTATACTAGCTTCACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 1893082-1897307 **** Predicted by CRISPRDetect 2.4 *** >NC_012623.1 Sulfolobus islandicus Y.N.15.51, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 1893082 24 100.0 39 ........................ TTTCCGATATGAATTGGATTATTCCATAGAACGTCTGGA 1893145 24 100.0 40 ........................ AACCCTTGCCCACTTACTGAATATAACGTCTTTGAGCCTT 1893209 24 100.0 41 ........................ CGTCTTTTCTGAGTAGCGTAGGATGTTCTTTTTTTATCCAT 1893274 24 100.0 39 ........................ ATAAGAAAAAGAGAAATAATAATTCATAAAAAATTCCAA 1893337 24 100.0 42 ........................ TTATACAAAAATTGAATGGATAGAAAAAATTATACCGGTTTT 1893403 24 100.0 40 ........................ GTTGATGACTTTATTCCAAGAAATCCATTATTTAGACCAG 1893467 24 100.0 41 ........................ GCTTTATTTCCTTATTATTTTCTTTGGTTGAAACACTTTGA 1893532 24 100.0 41 ........................ AAAATAATGTATGAAATATTGTATTTTGTTATAATATCTTT 1893597 24 100.0 41 ........................ AAAATAATGTATGAAATATTGTATTTTGTTATAATATCTTT 1893662 24 100.0 41 ........................ GCATTGAAACCGCGGCCCGAATCCACGCCTGTGGAGACAGC 1893727 24 100.0 39 ........................ AAAATAGGTTTTTTTACGCGATTTCACCGTTCGTGCTGA 1893790 24 100.0 41 ........................ TTCTAAAAATCTAACATATAAATTTTCTATATTATATCTCT 1893855 24 100.0 43 ........................ CTTCACTGATGTAATCTATGCACTCCTCCTTCATTTCATCAAC 1893922 24 100.0 40 ........................ TAAACGGAGTTATACGTGTTCTGTATTGCGTTATTCGCAG 1893986 24 100.0 40 ........................ AGAGTGCCAGGCTTTAGGCTGGGACAGTCAAGCGTAGGAA 1894050 24 100.0 39 ........................ CGGTAAGTGAAAGAGAATGGTCTACTGTCGAACCAGAGT 1894113 24 100.0 41 ........................ TTCTTTTATTGCTTGCCTTATTAATTGACTTAATTGTTCAT 1894178 24 100.0 41 ........................ AAATCATTGCTGACCCTAAATGTATCATTGGGGGATGTCCT 1894243 24 100.0 45 ........................ ATATAATTACTATTGATGATATTAAAAAAAAATAAAATTCTTTTT 1894312 24 100.0 43 ........................ TTTCCCTATCATTTTTAGGCTCATAAGTAGTTAACATTGCTAA 1894379 24 100.0 40 ........................ TATGTTTTTCTAATTCTGTACGGTTATCTGCCGAATTTAT 1894443 24 100.0 42 ........................ TCTTTCGTGGCGTGTTGTCTTCTTGAAGTAAATCGAATTTAT 1894509 24 100.0 40 ........................ TCCAAACGCCTTGAGGATGTTCTTTTAAAAAATCTAGGAC 1894573 24 100.0 42 ........................ TTTCTGCGGTTTCCGCCGTTTTTCGCTGCACACTTTCCTCTA 1894639 24 100.0 40 ........................ GCAATCAAGAGATTTAATACTTCAACATCGCAATCACAGA 1894703 24 100.0 37 ........................ TTTTTACTCCCTAGTATAGTGTATGTCTGATATAATA 1894764 24 100.0 43 ........................ TTATTATATGTTATGATATTATAGCCAGCTTCTTTCAATAGCT 1894831 24 100.0 42 ........................ GTATACTTTATCAATTCTTCAAGTGTTAGACAACCACGATTT 1894897 24 100.0 40 ........................ CAAGATTGTAAGGGAAGGGTTGACCGGGTAAAGTCACTGC 1894961 24 100.0 42 ........................ CAACCCAATTCCTCAGTAGGTGCTAGCTCTAGCGTAAACTTG 1895027 24 100.0 39 ........................ ATAAACCATTCGTTACAAATAACACAAAACAAGGTCTCT 1895090 24 100.0 39 ........................ ATTTCTTTTGAGTCATATATTTTTATTTTATTTTCTTCA 1895153 24 100.0 41 ........................ TAAGGAGTTTCCATATTGCAATCCTTAGGAGTTCACTTACC 1895218 24 100.0 39 ........................ AAATCTATTCGGAATAATTTATGATTTTAGTGAAATTAT 1895281 24 100.0 41 ........................ TCTATAAACACTCTTGGTAATTTTACATAAAGATGCTCCGA 1895346 24 100.0 40 ........................ TCTTCCGTCTTCGTAACAATTTTCTCTGTGACGCTCTCAA 1895410 24 100.0 36 ........................ TCCTTAACGTAATAAGGAGTCTGATCTCTCATACCC 1895470 24 100.0 40 ........................ GTCGTGTTCTACAACTCTGCAGGAGGGACAATTTACATAC 1895534 24 100.0 39 ........................ CAAAAGCCCTTTTTCTTTCCCCGCCTATGTTCTTCTTCG 1895597 24 100.0 39 ........................ TTCCCGTGGTCGCAGATAGGCTACATAGGGATAAGAGGC 1895660 24 100.0 41 ........................ TTTAACTTGTCTCTCACTTATGTTTAAAACTTTTGCAATTT 1895725 24 100.0 43 ........................ CTCCGAGGGTAAATATCAACAAGCCCTGCAATTAGCCCAACAG 1895792 24 100.0 44 ........................ TAATTGGAACAAGCGAGGGACATTTACCTGTGCCAAGTTTTCTT 1895860 24 100.0 38 ........................ GTTTTGGCAAACATATGTTTGACCAAAAATGGTGGAAA 1895922 24 100.0 39 ........................ AACTGGTTAGCGAAAAAGGTTTAAATACCAGTTTTGGCA 1895985 24 100.0 43 ........................ AGAACTGCTTTTTCTTTTTTACCTAACCTAACTTTTTGACTCA 1896052 24 100.0 44 ........................ TTCTCGTTTTCCCTAATTTGATATAATGTCATAAAAAGATCCGT 1896120 24 100.0 42 ........................ TTGTTCTCACTCTCGCATACAACTTATAATATTCTGTGTGCT 1896186 24 100.0 40 ........................ GAAATATCAGCGGAATTACCCCCACCACCGCGTCATAATA 1896250 24 100.0 39 ........................ AGAGTCCGAGAGAGACTATTCATTTGACGACAATGTGAG 1896313 24 100.0 39 ........................ AAATTATATTTGGCTCTTGATGATTTAACTATGGCATTA 1896376 24 100.0 39 ........................ AAATTATATTTGGCTCTTGATGATTTAACTATGGCATTA 1896439 24 100.0 40 ........................ ATATTGGCTGACCTAGTACTCCTAAATTTCAATATTCCAA 1896503 24 100.0 38 ........................ GAGGAAGGATTAATTTCAGCACGAATTTCTATTAATCC 1896565 24 100.0 41 ........................ CCTGCTTAGGCTGCACATTTTCTTCCAGAAGGTCGAATTCA 1896630 24 100.0 43 ........................ TGAGAGGTCAGAGAAGTAAAAATCTATAACCGTGAAATTTTAG 1896697 24 100.0 46 ........................ TTTCCACTATGGTCTTACACAAACCTTGCCAACATGACATTTGACC 1896767 24 100.0 40 ........................ CAAAAAACTCTACGATTTTTTCAAGATATTCTTTGTACTG 1896831 24 100.0 38 ........................ ATAACAACACTCCAATTTACAAAAATAATCTTTATAAT 1896893 24 100.0 45 ........................ TAGTCCAAGCGGAAGCTTAGAGGCTGACCTGAATAAAAAGGTATT 1896962 24 100.0 40 ........................ TTATGCCTTGGATCATAAGATATATATTTTGTATCACTAT 1897026 24 100.0 43 ........................ GTTAGCATTATACGAATGTAGGAAGTTTAAAGATCAAGTCTTA 1897093 24 100.0 40 ........................ TAGACTCAAGAACTGGTAATCCAAAGCCTTCAGTTCCAGA 1897157 24 100.0 39 ........................ GTCACTTTTCACTTTACCTTCTTTGAAATTTGTTATTTT 1897220 24 100.0 40 ........................ TTAATTGCTGACGATTTAAATAAACTCATTGACGCAATTG 1897284 24 95.8 0 .T...................... | ========== ====== ====== ====== ======================== ============================================== ================== 66 24 99.9 41 GCTAATCTACTATAGAATTGAAAG # Left flank : CAGACATAGACAAGCCTAGATATCTTCTGGGTTTTATTGGAGGCATATGATAATTCCAACCCCTTAGTTCCTCCTCTATAGGGTCAGAAGCCCTATAGGAGTGAAGCCTCCTAACTTGTCTAATTATCTGCGACCTCACGTTATACATTATGCAAAAAGAATCTAAAATGCACGATAATGATCCTTGTAAATTTCTTCCCGGTTTTAGTAAGGATAATCTTAATAAACGACGATTTTCCTCTTGATGAAGAATAATGGAAAATATAGGGAAAGTGTTCTCCCGTATATGATCCTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTATCCTAAATTCATTATCTTTATGAAGAATTCCTTAAGATCCCGAAAAAACCCGGGAATAGTAAAAAAGATAAGAAAGAGTAATATAATACTAATGGAAAGAGTAGAGAAGAAAAACTTATAAGAAAGGGAGAAGAAAAGATTAAATAGAGGGTTAAAAAACCCTCA # Right flank : GTTAGTGTATATTACCCTTGCAATTACTTCGTCTTCACATATTTGTTAATCTACTATAATAACGCCCTTCAACCTCTCCCTAAGTATATTGTCGGCATCTATTGGTCTCTTCTTGTGGATCTTGTAGAATTTTATGTAGGGAATTTTCAGTCTTTTTCTCGCTATTCTCCAAGCTGTTACGTGAGAATGTCCGGAATGTAATTATCTGAATGAATATATAAATGGAATGATAAATATTAATATTATCAGAAGTATATAACCTGGTTAATCTGGAAAAACTTGATCATGGAAAAATATCAAGTTAAGAAGATTTATTTATCATGCATGGTGATGCTTGAGTGCGTAATGACGTTTCTTAGAGTTGAACTATTCGACGTCCTGGAGGGGTTCTTCGTTGGACGGCTAGGAACATCCTGATGTTGTAGAAGACTCCCAGGACGTGGAGGAAGGCTTCGTTCCTCCACACCGTGGTCCCATAGGGCCTCCAGAACTTGTACAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //