Array 1 48148-50279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABOX010000010.1 Serratia fonticola strain S14 Serratia_fonticola_S14_L001_R2_001_contig_10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48148 28 100.0 32 ............................ CCAGCCGCAGCAAAAGCCAGGGTGGCCAGAGT 48208 28 100.0 32 ............................ ACATCCTCAGCCCGTGCCGACTCATTCAGGCA 48268 28 100.0 32 ............................ AAAGGGCTGATTAAGAACGTTGAGCAATGGGC 48328 28 100.0 32 ............................ AGCAGAAGATAGCCAACTTGAATAAGGAAATT 48388 28 100.0 32 ............................ AATTGTTGCCAGCGGCGCATTGGCCATTGGCT 48448 28 100.0 32 ............................ GCTAAAGATAACACCCATATTATCTTTATAAC 48508 28 100.0 32 ............................ AGGATTCCCCAGCCCACGCCCATCGCGCCACT 48568 28 100.0 32 ............................ ACATCGCAGGTCATGAGTACGAACCGAGGCCC 48628 28 100.0 32 ............................ AAGTTATCCGCCGTGACCAGGAAGCCGAATTG 48688 28 100.0 32 ............................ TCAAAGCAATGATGATAATTAAGCGTGAACAT 48748 28 100.0 33 ............................ ATTGTGGGATTCGTGCCCACGACGTCCATGACC 48809 28 100.0 32 ............................ AATATGTGGACAGGCACCAGGTGATCTCACAT 48869 28 100.0 32 ............................ ATCCGCCAACGCCTTCATGATCCTCTGGCCAG 48929 28 100.0 32 ............................ GTGCTCAGCAGGCAAGGGCTGCGGCGGTGGGG 48989 28 100.0 32 ............................ CACGCCAGCAATGGCTTCAGTTGTTAGTGTTG 49049 28 100.0 32 ............................ GTGAGCTGGTAAACAACCATGTTCCCGACTTC 49109 28 100.0 32 ............................ AATACGGCCGCGTCGTTACCGGGGGTTTCCAG 49169 28 100.0 32 ............................ TTATCGTGCCCAACGGCCTGACACACAACACG 49229 28 100.0 32 ............................ CCTACAGGGTACGCGGGGAGCAGTACCACTTT 49289 28 100.0 33 ............................ CTGTGCGGGGGCGACAACGCTGTTGTTGGAATC 49350 28 100.0 32 ............................ AGGTGATCGCCCCAGCGGCCCCTTGCGCGTCA 49410 28 100.0 32 ............................ ATCGTCACCGCGCCCGCGCTGTGGCTGACTGA 49470 28 100.0 32 ............................ TGTCGGGCCGTGCTGTTGGTCGACTGCAACTG 49530 28 100.0 32 ............................ TCTTAGAATCGATTCTAGAGCGTTTTAGAAGA 49590 28 100.0 32 ............................ CACCACGAACGCCGTAGTTGAGTGGCTTTCCG 49650 28 100.0 32 ............................ GGCAGCCTGAGAAGCACCCAACTCAAAATTGA 49710 28 100.0 32 ............................ TAATGGCAACCGTATTTACCGAACTCGAACCA 49770 28 100.0 32 ............................ TTCAACGTGCTTATCGGACAGGCGCTCGTGAT 49830 28 100.0 32 ............................ GATCAGGAAAAGGCGTTTTTCGCCAAGGCCTG 49890 28 100.0 33 ............................ GTTATGCAGCGCCTGCTAGACCGTCTGAAAAAA 49951 28 100.0 32 ............................ TTGAAGCCTTAGCCAAACTTAACGCCGCAGTA 50011 28 100.0 32 ............................ AGGAACAATGCCGCCAAGATTGACCGGTTGAT 50071 28 100.0 32 ............................ AGGTTACGGATCAAGCTGTTGCCCTGCTGGCC 50131 28 100.0 32 ............................ AACAAAAATTGTTAAAGGATGAATAATGAAAG 50191 28 100.0 33 ............................ AAACGCAGGTTATCGACTATGGAAAGTAAAGAA 50252 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGATAGCAAAGGCAACAGTGTGGGTTCTGTGGGGCAAGGTGGGCAAATGTATGCTCGTGTAGCGGAAGACAAAGGAGAACTGGTTGTAAAGTGGGGCGCCGGTAGTGAAATGCAATGTACTGTGGGGTATATGCTGATGCCGCAGGCAAAAAACAGTCCCGTTTCGGCGATCCAGGTCTTCGATTCAGTTTGCCAATAGAGAACAGCACTCTTAGTTATCAATCTGACGGGAGCTATGGCTCCTATCTCCTTTTCTCCACTGAAACTCTTCCGCACGGTGGTATACAAAAGAGCTGCATTCGTCCCTTGGTAGCTCTGTAATCATCCTGCGAACCTGTATCTATCCCTGATACTCGTAGTATCCCTCTAGACCCTAATTTTGAAGCCATTCATAACTCATTGATTTTAAAATAAGGATAGTGAGTGGATGAAAAAAGGGTTTTCCGGAGGGTTCCAAGGTTATTGTTTAAGTAACAGAGAATTAGCGCTAGGATGTAACA # Right flank : AAGCCAGCGCGAGCTGGTTTTGAACTTGCGGCAGTTCATTGGCGCACCGCCAACTTTCCACCCCCAAGATTGTTTTTATTATTAAGCTAACTGATATAAATGATTCATAATTTGTATCTATCTCTATGATTCATCATCAATATAAATTAAATGAAAATCTAACATCAATCACTCTATACAGTTAGCCTATTATGTTAAAACAACAATATCGCGTTGGCATCTGTCATAGGTAATCACCTCTTGGATGATTTTATGGCATAAAGCAGGGATGTTTTCATTTAATGCAAAATCAATTTTCGCCTTCTGATCTAAAAACCATCCTGCATTCAAAGCGTGCGAATCTTTACTACCTGCAGCATTGCCGGATCTTGGTCAACGGCGGCAGGGTGGAGTACGTTACGGATGAAGGTAAGCAATCCTTGTATTGGAACATCCCGATCGCTAATACCACAGCTGTAATGTTGGGGACGGGAACTTCTGTTACTCAAGCGGCAATGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 58816-60526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABOX010000010.1 Serratia fonticola strain S14 Serratia_fonticola_S14_L001_R2_001_contig_10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58816 28 100.0 32 ............................ CATCGGAGCCACTGACGCCGCCCCCTCAACTG 58876 28 100.0 32 ............................ GTCGCACAAACGCAGAGCCGCGCGGCCGACAT 58936 28 100.0 32 ............................ CCCGGTGCCTGGTTCTTCCTGCGGCACACTAA 58996 28 100.0 33 ............................ CGGGCTAACATTTTTTCTACAGAATCATCTTTA 59057 28 100.0 32 ............................ TGAACGAGTCCGGGCTGATGCTGGCCACGCTG 59117 28 100.0 32 ............................ AGCAGCTACGGCCTCGGAAATAACATCAGCTA 59177 28 100.0 32 ............................ GGCAAGTGCTTAAGCTCATCAGGCAACGTGGA 59237 28 100.0 32 ............................ TACTGCCCCATTAGGCATATATAGTGCCGGTT 59297 28 100.0 32 ............................ GAGCAGTTCAGACTCAATCTTGTTTGCTTTCT 59357 28 100.0 32 ............................ ACAACCAAAGCGCCCAGGATACCGCCACCGCC 59417 28 100.0 32 ............................ TCAATAGCAGCACTGACTCAGCAATATTTATG 59477 28 100.0 33 ............................ CACCGGCATATTCGGTAGTGCCAATAACATGTT 59538 28 100.0 32 ............................ GGTAACTTCAACACTTGGGTCAACACCATGGT 59598 28 100.0 32 ............................ CACGAATAAATATCGGGGCCCGGTATGTCAGC 59658 28 100.0 32 ............................ CCGGATGACGTTCTTGATATCGCTGAATTATC 59718 28 100.0 32 ............................ TGTTGGACATTACACTTGCACCCAGACAAAGC 59778 28 100.0 32 ............................ TCCCTTACAGCCAGCAGCTCAGCCAGGGCATC 59838 28 100.0 32 ............................ CCTAGATTTCCTTTTCCTGCATCGTTCACGGC 59898 28 100.0 32 ............................ AGCTCCACCAGCTCCACCAGCAGGCCCGCAGA 59958 28 100.0 32 ............................ CACACCAGTACAGCATCGTTCCGCAACATAAA 60018 28 100.0 32 ............................ ATTCGGCCATAGCGTTGGCCGGGTATGGGCCT 60078 28 100.0 32 ............................ TAGCGGGTGCTCAATGTCCACAGTTATTCCTC 60138 28 100.0 32 ............................ GATCCCACTGATTAAAAACACTGTGGAAGAAG 60198 28 100.0 32 ............................ CACCGCAACGAACAGAGCTCAGAGCTGCGCAT 60258 28 100.0 32 ............................ TGCCTGAGAGCGCCGGTAATTTCAGTTTGTGC 60318 28 100.0 32 ............................ TTTGTGGTCCATTCACTGTCTGGTCAGTGTCC 60378 28 100.0 32 ............................ GGAAAGACCACTTCATTGAAGAGGGTCGACGG 60438 28 96.4 32 ...........................G GGTTTACCCCTGAGAAAGTTAGAGCGGCTTTC 60498 28 78.6 0 .C.....A...C.C...T......A... | C [60524] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGTGCTCACTGCCTTTGAGACTTTACCTTGGCGTAAAGGATTACGGGATTACACGGAATGTGGCGAAATTCTGCCGATACCCGCCAATGTAAAATATCGTACAGTGCGACGAGTGCAGCTCAAAAGCAGCGCCGAGAGATTACGTCGTCGCTCTGTTCGCAAGGGATGGGTAACTGAAGAAGAGGCTCGTCTGCGTATTCCTGATGCCGTTGAGAAACGCTCAGCATTGCCATTTATTCGTTTAAAAAGTCTATCCAGCGAGCAAACCTTTTTGTTGTTTATCGAACAAGGCAAGATTTGCGATAACGCAACAGAGGGGGTATTTAGTGCTTATGGTCTAAGCGCAACGGCAACCATCCCGTGGTTTTAACCCTAATTTAATGACTGATTCTAACCTATTGATTTTAAAGGTTGGGGTCAGTCATGTTTAGAAAAGGGGTTTTGGATGGGGTGGCTGGATTCTATTTTATTAACAGTTAGTTACCGTTGGCATGTAACA # Right flank : ATAACCTGGAGAGGGAGGCGCGTTGAAGGTCTCAATCTTCGCGTTTACGGAAATAATGTCCACAGTGGGGGCAGATCAGCGTGACGTTTTTTTTCACCTTGCTGCGATTTTGCGGCGAACTTTTTGCGCATTCAGGGCAGGTGACATCAACGGGGGCGTCACCGAATAGCTTAAAAGCATCAAAGAAAGACATCTTTTTCACCGGGAAGAGGTAGGAGGAGTTCAGTGTACCTTTATCGCTCGATGATAGCTCCACATAGATTGGTAAACCACTGGTAGAGACGTAGCTAGCTGCGCGCTAAAAAGGGAGTAACAAGTGGGGAGAAGGGGCGGAGGGGAAGAAAAAAGCCCCGCAAAAAATGAGGGGCAAACACAACAACACCAGGGAAATCGTTGATAACTAATCTGCTATTACTATATGTTTTTTGAGACGAGAGTTCATCAATAAATTGCTGCATTATTGCAACATTATAGTTAATTAATTTGTATGCATTTGGCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //