Array 1 1827921-1829535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027414.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_320 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1827921 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 1827982 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 1828043 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 1828104 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1828165 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1828226 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1828287 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1828348 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1828409 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1828470 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1828531 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1828592 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1828653 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1828714 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1828775 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1828836 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1828897 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 1828958 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1829020 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1829081 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1829142 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1829203 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1829264 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1829325 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1829386 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1829447 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1829508 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1845668-1847144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027414.1 Salmonella enterica subsp. enterica serovar Typhimurium strain FDAARGOS_320 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1845668 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1845729 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1845791 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1845852 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1845913 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1845974 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1846035 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1846096 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1846157 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1846218 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1846279 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1846340 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1846401 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1846463 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1846524 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1846566] 1846566 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1846627 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1846688 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1846749 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1846810 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1846871 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1846932 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1846993 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1847054 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1847115 29 96.6 0 A............................ | A [1847141] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //