Array 1 1618-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYZ01000003.1 Salmonella enterica strain BCW_6167 NODE_3_length_420863_cov_4.61254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1617 29 100.0 32 ............................. CGCCCCTCATCCACCAGGGCGATGTGATTCCC 1556 29 100.0 32 ............................. TGGTAGCCGACGGGCGTATTGCGGGGTGCATA 1495 29 100.0 32 ............................. GCTGTTTTGACTTTGGATCGTGAGCAGAGCGT 1434 29 100.0 32 ............................. CGCGTTCAGACATTTATCAAAAAACGCGACGC 1373 29 100.0 32 ............................. TTTGCCGCCTCGTAGTAATCCACCAGGCCAGC 1312 29 100.0 32 ............................. TTTTGAGAAATAGCCATCTTTTTTAACTAACT 1251 29 100.0 32 ............................. CGAACGGTGCTGAAATTATTGAAAATGCGGTA 1190 29 100.0 32 ............................. CGATTCCAGGCGAACGCGCGTCTCAGCAGGCA 1129 29 100.0 32 ............................. GACACTGGTCTATTATCGCCCACCGGAAGAAT 1068 29 100.0 32 ............................. CCGCACCGCTGGACAGTCGAAGAACTGGCAGA 1007 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 946 29 100.0 32 ............................. GTATCGATCAACACTAATTCGCCAGTGTTCAG 885 29 100.0 32 ............................. TGGCGCCGTAGGGGGTTGCAGAATTTTATAAA 824 29 100.0 32 ............................. GCGAACCCTCATCTGTTACTGGATCAGTGCGT 763 29 100.0 32 ............................. AATTGCCCTTGCTGCCCGGCTCTTCTACGGTC 702 29 100.0 32 ............................. CATCCAGACGAAAAAGCGCGTTTCGCGGCGCT 641 29 100.0 32 ............................. CTGGTTGTTGGCTTTTACATGGATTCTGGTCT 580 29 100.0 32 ............................. CGGCTAACGAGTGTCGCCCGTGGAAACGTAAC 519 29 100.0 33 ............................. GATCGCTCCGTTCGCGTCGAACACCCGGAGGGG 457 29 100.0 32 ............................. GGGGAGAGAGGAAAGGGGGGTTTGGGGGGTAT 396 29 100.0 32 ............................. ATCGTTGTGGTCCGCGTTGCTGAGGACGAGGA 335 29 100.0 32 ............................. CGCGACAGCGCGTTTCACTGCATCGTCCATAA 274 29 100.0 33 ............................. CCAGTCAGCACCAGACCAGAAGCCGTTAACCGC 212 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 151 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 90 29 100.0 32 ............................. TTGAAGATTTGGTGAAGGGCGCATTTGAGGAC 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18152-17758 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYZ01000003.1 Salmonella enterica strain BCW_6167 NODE_3_length_420863_cov_4.61254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18151 29 100.0 32 ............................. GTAATTTTACCAAAAATTCTTTCTTTTTCTTC 18090 29 100.0 32 ............................. CCGCCAGTGCCGCCTTTAGAATATCTGTATTA 18029 29 100.0 32 ............................. GACGTATTGATAGTTTAGACAGTAAAGTTGAT 17968 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 17907 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 17846 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 17785 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTATCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAACTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162337-161026 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYZ01000010.1 Salmonella enterica strain BCW_6167 NODE_10_length_162392_cov_4.55064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162336 29 100.0 32 ............................. TTCGTGCTTAATAGAGGAGGCTGGTTAGATAT 162275 29 100.0 32 ............................. GCGGGACTGTTAGGGATAGACCCCGGAGATTT 162214 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 162153 29 100.0 31 ............................. ACCAGATTAAAGTCGGTCTGGAAATGGTCAT 162093 29 100.0 32 ............................. TTATCTGGACAGGTGACAGCGAACACGAAATC G [162092] 162031 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 161970 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 161909 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 161848 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 161787 29 96.6 32 .............T............... CCGGGTGCACGCTTTTATTTTTTATGACTCCC 161726 29 96.6 32 .............T............... CAATTTTTAACGATCACTCAGATAAAACAGCA 161665 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 161604 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 161543 29 96.6 32 .............T............... ACCTATATGCGCGCCACGGGTAAGACCTGGGA 161482 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 161421 29 100.0 32 ............................. GAGGTAAACGCAGCGGTACCCCTGCGGGGTAT 161360 29 96.6 32 .......................T..... CACTTGTAATTCTTCGAGTTTATCGATGAATT 161299 29 100.0 32 ............................. ACGTTTATTCATCAAATGGGGAGATTCTGCTG 161238 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 161177 29 100.0 32 ............................. TTCCGCCATGACCGTTTCGGCCTCCAGCTTTC 161116 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161055 29 96.6 0 A............................ | A [161028] ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGTTGAAGATTTGGTGAAGGGCGCATTTGAGGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGTGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //