Array 1 1273-121 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGJ01000030.1 Mesorhizobium sp. Root157 contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1272 32 100.0 33 ................................ GCGAACACCCGGCATCTTGTCGCCGTGACGGTC 1207 32 100.0 33 ................................ AGTTCAGTCGTCCTCGCACCATCGTGCGCCTCT 1142 32 100.0 35 ................................ AGCTGCAGCATTTACTTGCCCTTGGAAGTAGGAGA 1075 32 100.0 34 ................................ AGCCACAGACCGAAACTATTCAGGATGTGCTTAC 1009 32 100.0 34 ................................ ATAATCATTGCTCCATTGTTAACACGGCAGTTTG 943 32 100.0 33 ................................ TGGCCCATTCATATGGCCGGACAAGGGCCGCAA 878 32 100.0 34 ................................ CTTACACGATGGGCATTTGCGACATCGTGACCAT 812 32 100.0 34 ................................ ATCGGCAAAGACTCGCTTGCCACCGGCTTTTTGC 746 32 100.0 34 ................................ CGAAGCCTACTACTGGTGCAACGAGCGTGAGCTT 680 32 100.0 35 ................................ TGTCAACTTCATCTCACCGCCCTCCCGTAGCCGTA 613 32 100.0 33 ................................ TAGGGCCAAAGGGCGAGGTCATCTGCGTTTACG 548 32 100.0 33 ................................ TGCACAAGCAGATCGAGAAAGACAGCTGCATTA 483 32 100.0 34 ................................ CCTGCCAGTTTCATCGGCGTTGCGACTGCGCCGG 417 32 100.0 34 ................................ TTCTGATCGAGCTGATAGTCCATGAACGAGCCGC 351 32 100.0 35 ................................ TCGATCACCGCAAGCGCATCGGCAAGCCGCTCACG 284 32 100.0 34 ................................ CTTGCTGGCCTTTCCGACGAACAGAAGGCCGCTG 218 32 100.0 34 ................................ TTTTACGACTGGCCTAGCACAAGGCCGGAAGTCG 152 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 18 32 100.0 34 GTCGCCTCTCGCACGGAGGCGTGGGTCGAAAC # Left flank : TAGCTTTTTGCCATGATGGTGCTTGTGACCTACGATGTGAAGACTTTGGAAGGCGATGGCGCGCGCAGGCTTCGACGCGTCGCCAAAGCTTGCCAGAATTTTGGACAGAGAGTGCAGTTTTCGGTGTTTGAGATCGAGGTCGATCCGGCGCAATGGACAACCATGAAGGCGGGGCTGGAGCGGATCGTCGATCCGCAACACGATAGTTTGCGCTACTACTATCTCGGCGCCAATTGGCATGGCCGGGTCGAGCATTTCGGCGCCAAGCCTGCTGTCGATCTTGGTGGCACTCTCATTGTCTAAGCATAGTGTGACCGACTCAGCGCGGACGTGAAGCGTGCCGGCGCCTCCCGGCCGGTTCGCGCTGCTGCTAGTTCTTTGAAATCGTGAAGAATTCCCGACTAGAGCGCGTTTCGACAGGCGCTCGTCATGGGCTTTTGGCGCATTTCGCGATCAGTTCTTTCTTTTCTCAAGCATTACAATGGACTAGCTACTACGCA # Right flank : CAACACCAACAGGGTTTACGCTGTTGGTTTCCACGCGGAACTGAGCCGGTTTTTCCACCGAGAAGTGAGCCACCTCTGAGTATGGTTTTCTGATCAGGGTTTGGTCAAGGGATTGGCCTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCTCGCACGGAGGCGTGGGTCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 101-656 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGJ01000034.1 Mesorhizobium sp. Root157 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 101 32 100.0 34 ................................ GGGGTAATGACCAACGCTATGAAGGGTCCCAGCC 167 32 100.0 33 ................................ TTGGCCAGCCGCCGCCATGTCGAGCGCCGTGCC 232 32 100.0 33 ................................ TCAGTTCCTCCAGGTCGTCGCGATCCTCGATCT 297 32 100.0 34 ................................ TACGTACGCCATCGCGATCTGCCCGAAGATGTTC 363 32 96.9 33 ........................A....... AATCCAGCGATCGATGCCGCGTCGGCCAAGCAG 428 32 96.9 35 ........................A....... GATCAATGACGAATCAGGAGCGCTTAGCGCGACCG 495 32 100.0 33 ................................ GAAAGAAGCTTTCGAAGCGCTCACCGCCATTGA 560 32 96.9 33 ................G............... CGCTTCAAGGACGCCAACGGGGTGCCTGTGCCT 625 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 99.0 34 GTCGCCTCTCGCACGGAGGCGTGGGTCGAAAC # Left flank : TGCCCCCGCCACTCACCGCGTTGGGGGAAGGTTCACATGGCTCAATTCTCAATGGAAATTATGCGCCTAACCGGCTCAGTTCCGCGTGGAAACCAACATCG # Right flank : CATCTCCGAACTCATCCGTGCTGCGAATGAGGCGCGCTCAGGCGTGGGTCGAAACAACAGAAACAGAATCGACGGATAGTTCCACTCCCTTGTTTTTGCAGGGTTTTGGATGGCGGCTGGTGCCGTTCCTTCCAGTTGCCGTAAAAGCGCCTTCAATCGACGTAGCGGTTAGGCTAGACCGCGCGGCGGTTTGTCATGGTTATGAAGCCTTGATCCTTGGCTGTGTCGGGATCACAGTAGCCGAGCAGACGAAGCAGGTTTGATCGATGATGGGAAATGCAATCGCAGCGATCGCAGGTGCCGAAGGCGCCGTCATTGAGGAACTGCTGGAGCGAGCGGCGACTGATTGGCGCGCCAGCGGGCTGAAGGTCTGCGGCGCCCTGGCCGAATCGGATCGCATTGCGGATCGCACGTGCAGCGCCGGCTTCTTGCGTAATATCGAGACCGGCGCGCGCTTTGCCATGTATCTCAAGGATCCGCCCGCCCATACGTCGTGCCAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCTCGCACGGAGGCGTGGGTCGAAAC # Alternate repeat : GTCGCCTCTCGCACGGAGGCGTGGATCGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //