Array 1 219421-218537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMR01000001.1 Salmonella enterica subsp. enterica serovar Newport str. CVM22699 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219420 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 219359 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 219298 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 219237 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 219176 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 219115 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 219054 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 218993 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 218932 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 218871 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 218810 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 218749 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 218688 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 218627 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 218566 29 100.0 0 ............................. | A [218539] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237276-236090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMR01000001.1 Salmonella enterica subsp. enterica serovar Newport str. CVM22699 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237275 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 237214 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 237153 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 237092 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 237031 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 236970 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 236909 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 236848 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 236787 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 236726 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 236665 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 236604 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 236543 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 236482 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 236421 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 236360 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 236299 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 236238 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 236177 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 236117 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //