Array 1 469680-471293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMU010000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 221 NODE_3_length_729256_cov_76.9068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 469680 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 469741 29 100.0 31 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTAT 469802 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 469863 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 469924 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 469985 29 100.0 33 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGAG 470046 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 470107 29 100.0 30 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGA 470168 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 470229 29 100.0 33 ............................. ACCACATCAATGACCACATCACGCAGATATTAG 470290 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 470351 29 100.0 33 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTAG 470412 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 470473 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 470534 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 470595 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 470656 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 470717 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 470778 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 470839 29 100.0 33 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTAG 470900 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 470961 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 471022 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 471083 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 471144 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 471205 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 471266 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 487553-488375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMU010000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 221 NODE_3_length_729256_cov_76.9068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 487553 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 487614 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 487675 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 487736 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 487797 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 487858 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 487919 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 487980 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 488041 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 488102 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 488163 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 488224 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 488285 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 488346 29 96.6 0 ............T................ | A [488373] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //