Array 1 1-987 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDMN01000060.1 Pseudomonas aeruginosa strain Pae_CF67.05e CF67.05e_contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 26 92.9 32 --.......................... CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 59 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 119 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 179 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 239 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 299 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 359 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 419 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 479 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 539 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 599 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 659 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 719 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 779 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 839 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 899 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 960 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11507-9862 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDMN01000060.1 Pseudomonas aeruginosa strain Pae_CF67.05e CF67.05e_contig_60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11506 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 11446 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 11386 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 11326 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 11266 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 11206 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 11146 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 11086 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 11026 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 10966 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 10906 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 10846 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 10785 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 10725 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 10665 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 10605 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 10545 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 10485 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 10425 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 10365 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 10309 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 10249 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 10189 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 10129 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 10069 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 10009 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 9949 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9889 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62914-62285 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDMN01000047.1 Pseudomonas aeruginosa strain Pae_CF67.05e CF67.05e_contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62913 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 62853 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 62793 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 62733 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 62672 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 62612 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 62552 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 62492 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 62432 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 62372 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 62312 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //