Array 1 1801-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUI01000020.1 Bifidobacterium pullorum DSM 20433 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 1800 28 100.0 33 ............................ CAGGTCGATCCACGCCGTCGGGTTGCTCGCGAA 1739 28 100.0 33 ............................ CTGGGCGCGCACCGCCCCGCCAGCGGTGTCGGC 1678 28 100.0 33 ............................ CATCGGCTGGAGCGTGGCCAGGACCTGGGTGAG 1617 28 100.0 33 ............................ GTGGACGGAATGGGCCGGCGTGTCGCAGAACGA 1556 28 100.0 34 ............................ ACGTGAACATCGAGGTCAAGGGAGCGTAACAGTG 1494 28 100.0 33 ............................ CGCAACTCACGCAACTCAGCGCGGGAAAACCGA 1433 28 100.0 33 ............................ CCATGCCAGCCGGTGCACCGTGTCCTGACCCAA 1372 28 100.0 37 ............................ CGCGGGCAGCCTGTATATCCCGAACCCGAACGGCGTG 1307 28 100.0 33 ............................ CGCAACTCACGCAACTCAGCGCGGGAAACCCGA 1246 28 100.0 33 ............................ CGATATTCAGAACACTTGGAACTCGTTCTATCA 1185 28 100.0 33 ............................ CGACACGATAACAGTCACCACCGGGCGCACGCT 1124 28 100.0 33 ............................ CGTTCGACGCGAGCATCTGGCCGACCAGTATCG 1063 28 100.0 33 ............................ CGCCCTTCGTCCGGGCCTGTCCGTGCGCGTGAC 1002 28 100.0 33 ............................ CACCTGCACCTGTACGACGACTTTTACCTGTGC 941 28 100.0 33 ............................ CATCATAATCCTTACGCATTCCCATACTCCTTG 880 28 100.0 33 ............................ CCATTGATCCGCAAACCCTGCGGCGTCAACCCG 819 28 100.0 33 ............................ CCTGACGCCCGAGCAGAAGACCACGTTCATGAA 758 28 100.0 33 ............................ TCATTTGTTACGTTTGAACCGTAGATTTTAGTA 697 28 100.0 33 ............................ GCTGGTGTGGGTGCCGTTCCAGAACGCTAACGA 636 28 100.0 33 ............................ CGCGCCGACGCGGTGACCGGGTCGATGCGACCG 575 28 100.0 33 ............................ CGCGGAGGAAACCGTGCGTTCGCACCACTCCCG 514 28 100.0 33 ............................ CTGATCCGCGACATTTCATCGGGAGATGACGGT 453 28 100.0 33 ............................ CTGCCGAAACCACGCCTTGTTCTGGGGGGACTA 392 28 100.0 33 ............................ GCTGGTGTGGGTGCCGTTCCAGAACGCTAACGA 331 28 100.0 33 ............................ CGCGCCGACGCGGTGACCGGGTCGATGCGACCG 270 28 100.0 33 ............................ CGCGGAGGAAACCGTGCGTTCGCACCACTCCCG 209 28 100.0 33 ............................ CCTGACGCCCGAGCAGAAGACCACGTTCATGAA 148 28 100.0 33 ............................ TCATTTGTTACGTTTGAACCGTAGATTTTAGTA 87 28 100.0 33 ............................ GCTGGTGTGGGTGCCGTTCCAGAACGCTAACGA 26 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ===================================== ================== 30 28 99.8 33 GTCTGCTCCGCACACGCGGAGATGATCC # Left flank : GCCCGGATATCGTCTGCCGCACTGTGGCGTTCAGGCAGCAACGCGTGCATTACCTCCGCCATGCTTTTGCACCTGTACAGCCTTGTCTTCCCGGAAGACGATCGACCGTTCACCACCGCGCCAGCACGTTGTCCGACCAAAACCACAACCGTTGAATCCAATGGCGCACCAACCTGCGATCAGAAGAAAGTCTCCTCGACACCGTCCGAAACGGCATTTCCCTACCTCGCCTACGGACTACGTAACGCCCCGACTATCCCATTAAGCCGATTTCATCCATACGACTTCATCTGTTGCGCGTGCAGCACAAATAGATCGAGAGAGCGGAAATTGATGTAAGACACCTGCTAGTAAACGCATCCGAACTTCTCGGGCCAGGAAACTATTGTTGATATTCATTGTTTCAAGATGTGGATTTCGCGATATCCAACATCTCCTTCATTGCCGCAATCGAATATTTTGACGACTCGAGGCGGTCCGAATCGGTGTAAAATTCGACT # Right flank : T # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCTCCGCACACGCGGAGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 455-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUI01000012.1 Bifidobacterium pullorum DSM 20433 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 454 28 100.0 33 ............................ GCCAATGTAGCCTCGCGTGTTGTCGATGAAGTA 393 28 100.0 34 ............................ GGAATCTGGGGGGACGTTCAATATTCGCGGCCAC 331 28 100.0 33 ............................ CCCGCCGCTCGGCCAGATGCTGTCCACATCCGA 270 28 96.4 33 ..................T......... CATATGTCGCATCTGAACATCGTTTCATCCATG 209 28 100.0 33 ............................ ACATGGGAGATGCGGACCTGTCCGTCGTTGGAG 148 28 100.0 33 ............................ AACGGTTGGAACGGCAGCATCGATGGCAACGTG 87 28 100.0 33 ............................ CTGGTCGTCCATCTCAAGCCGCTGGCGCACCTG 26 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================== ================== 8 28 98.7 33 GGATCATCTCCGCGTGTGCGGAGCAGAC # Left flank : TTTGTCGCCATTCCGGTCGAGGGCGCACGCGTGGTGCGATTCCTTGCCGACGTCAAGTCCGAGCCAGACGCCGATGTCATTGGCCTGCATGGCGGTCTCCTTTGTCCGTTCGCCTCCGGGCCGCCGCGATCGACGTGCGATCATGACGCCCGGTCCCGGCAGCCACATTACGAGGAGGCCTCACCGCGCCCCAGGACCTGCGCGGCGGGCCATGTCCCTATCAGCGGTCACCAAGCGTCCCGTCCGCGGCGGCAGCACCCCCGGATCATGGAAATGACAGGGCGAAAGAGCCATACCGCGGTCGGCGACCAAGTCCCGAATCAATTTGAGGACTCACCTAATACTGTAATGGGCGGAAAGTAGGTGAATCATGGTTTCTGCCGCTGAGATTCTGGACGTTAGCGTTCGGGTTGATTATTCGTTGCAGTTACGTTCATCGTACACGTTTGAGCCGGGTGAGCGCGTTATGGGCGTGCGCGACCTTTCCGGCGGTCACGTTG # Right flank : G # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCATCTCCGCGTGTGCGGAGCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 76474-76262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUI01000003.1 Bifidobacterium pullorum DSM 20433 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 76473 24 100.0 39 ........................ TGGTGGTCCTGTTGAAAAGGTGGTGCCAAAAGGTCCGGC 76410 24 91.7 38 .................A.C.... AACCGTTACCGTTGAAAAGGTGGCGTCAGAGGGGCCGT 76348 24 100.0 39 ........................ TGGTGGTCCTGTTGAAAAGGTGGCGTCAGAAGGCCCGGC 76285 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 4 24 97.9 39 TAAGCGCGTAAGTCAACGGTTGAA # Left flank : ATTCGGGTTCCCCGCGTCTGTGGCGGCTGTCGAGGGCGCTCGCAGCGTAACCGTGTTACTCTGTGGACAGAGCTTTTCTGGCTCCCGGACGATGGTCAAGTACCCGGTGTGCGACAAGACTTGCCAGGAGTGTGTGCCATGTCATGGATTGTGCTGGTGGTGTCTGGAGTGTTCGAATCGGTGTGGGCCATCGCGTTGGACCATTCCGAAGGATTCACCAAGCCTGTTCCGGTCATTGTGTTCGTGGTTGCGCTGGTGCTGAGCATGGGCGGGCTGTCCTATGCGATGCGCGACATCGGCGTCGGCACGTCCTACGCCGTGTGGGTCGGTATCGGGGCCACGATTACGGTGTGCTACAGCATGATCACGGGGGCGGAATCGTTCTCGTGGGTCAAGATGCTGCTGATTCTCGGACTTGTCGGCTGTGTGGTCGGGCTGAAGCTGGCCGCCTGAGCCGCCAACTTTTCAACAGTTGAAGAGTTGGCGCCAGGAGGGGCCGT # Right flank : CAGGTGAGGTCGGCCATCCGTCCGCCGGCCTCAGCCGCGGCGCTCGCGGCAGGTTTGGCCCAGGCGGCGGGAAAGAGCAATCGGGTCCAACAGGGCGTCCAACTGCTCCGCCGGCAGATCCGTGCGCTTACCGGCCACCTCGCGCACCGTGCGATTCGTCGCCACGGCCTCCTTGGCGATTGCCGACGCGCGTTCGTAGCCGATTGCGTCGTTCAGCGCCGCCGAGATGGACGGCGAGCCCTCCGCGTACCGGCGTCCGGTCTCCAGGTTCACCTCGATGCCCTCCACGCAGTTCTCGCGGAAGATGCGCATCGCGTTGTCCATCAGCTCCATGCCGGTCAGAATTTCGTGCGTCATCACCGGGTCGAACGCGTTGAGCTGCAGCTGCCCTTCGGCCGCCGCCCAGTTCACGGTCACGTCCATGCCGAAGATCACGAAGCAGCACTGGTCCACGCATTCGGGGATCACCGGGTTCACCTTAGCGGGCATGATGCTGGAAC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGCGCGTAAGTCAACGGTTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 83964-83642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUI01000003.1 Bifidobacterium pullorum DSM 20433 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 83963 24 100.0 39 ........................ AGCGTGCTTTTGGACGCAAGGTTTCCTACAGCCTCACTA 83900 24 91.7 39 ................T.....C. GATGGGGTCCTTTGCGCAAGGTTTCCTACAGTCCCACTG 83837 24 100.0 39 ........................ ACCATGCCTGTTTCCGCAACCTTTTCTACAGGGCCGCTT 83774 24 87.5 39 ...........GT.........C. GATGGGGCCGTGGGCGCAAGGTTTTCAACAGTCCCACTA 83711 24 95.8 22 .C...................... ACCGGGGTGGTTTCCGCCACCT Deletion [83666] 83665 23 75.0 0 .C..............A.-.A.GG | T [83662] ========== ====== ====== ====== ======================== ======================================= ================== 6 24 91.7 36 TTCAACTGTTGACTTACGCGCGTA # Left flank : TCTACTGGTCGGTGACCGGCACCCACCTGCGGGACGTGCTGGACACGATCGAGTATGCGGTGGTCGAGACTCCGGCGTGGGTGGAACTGACGACGCTGCTGATTCCGGGCCACAATGACGACGATGCGCAGTTGCACGCCGAATGCGTGTGGATCCGCGAGCACTGCGGCGTGGACGTGCCGCTGCACTTCTCCGCGTTCCATCCGGCGTACCGGATGATGGACGTGCCGGCGACGCCGCTGGACACGCTGATCCGGGCGCGGCGGATCGCGATGGAGGAAGGGCTGCGGTACGTGTACACCGGCAATGTGCACCATCGTGAGGGTGATGCGACGGTCTGCCCGAACCCGGACTGCCATGCCGTGCTGATCCAACGCGACTGGTACCGGATCGAGCTGGACCGGTTGTCCCGGAACCATGGCGGTGACGAAACGGTTGGCGTCTGTCCGGATTGCGGCACCCCGGTGGCCGGGGTCTGGTGACGGGTCCGCCATCCACTA # Right flank : ACGCCGGCTTAGGGGACGTAGGTTAGACTAGGGCTGGACTGGACCGTTTTGGGGAAAGGAACGGCAATGGATTGGCTGACTCAGGCGCGGTGGCGGTTCGGCCGCATCGGCGCGGGCGCATGCGTGATGCTGGCCGCGTGGGTGGTGCTGAACGTGGCGTTGAGCGTGATACTGGTGCGGATAATGGGCGAGGGGGCGGCGAATGCGCCGCTGTGGCTGATGTTCCTCATCTCGAGCGGTCCGTTGTATCTAATCGCCATGCCAGCGGGACTGATGCTGATGCGGGCGGTGCCGGAGCTGCCGACCCGCAGGTTCGGCATGACCCCGGGCAGGTTCGTGACGTTGCTGCTGATGTGTCTGCCGATCATGTACGGAGGCAATATCATCGGCACCGTGCTGTCGGCGGTCCTGTCCGGAGGCGCGGCGGAGAACAGCGTGGCCAACTTGGCCATGGCCAATGATCCGGCGATGCTCGTTTTCGGCGTGATTCTGGCGCCGAT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAACTGTTGACTTACGCGCGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //