Array 1 168298-166599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH651384.1 Thiothrix nivea DSM 5205 Thiniscaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 168297 28 100.0 36 ............................ CATCCAGATGACCATTACGACCTGCCTGGTTAAGCT 168233 28 100.0 36 ............................ CCACCATGATTTCCGCCAGCGCCAGCAGTTGCGCGT 168169 28 100.0 36 ............................ CCGGGAACCACAGCCTGCGCCAATGCCGGTTAAATC 168105 28 100.0 36 ............................ CCCAATCTACTCCCCGCCGCGCCGGTCAACGCGGCG 168041 28 100.0 37 ............................ CTGAATTCGGCGTCGACCCGCTACTGGTGAAATCAGT 167976 28 100.0 36 ............................ AGACATGAACGCCGCCTGCAATCCCGCCAATGTATC 167912 28 100.0 37 ............................ ACTTCAACTTGCCCGGCAGTTTTTCCGTGTTCTGACT 167847 28 100.0 37 ............................ TATTAATGTGAATTGTTGCAAGGCTTCTGGCATACAA 167782 28 100.0 37 ............................ ACGTACACCTGTTCTGCTTTCGCAATCTTCGCAGCAA 167717 28 100.0 36 ............................ CTTTGCGGCTGCTTTTCAGCAGGGCTGCGGCGCGGC 167653 28 100.0 36 ............................ GCGCTGGATGTGCTGTTCGCCAGCCGTCAAGTCGCG 167589 28 100.0 36 ............................ CCACGATTCCGTTGCGCAACCAGACATAATCCTCTG 167525 28 100.0 36 ............................ TCAGCTATTGGCTGGCTGAATATGACGCTCCATCAT 167461 28 100.0 36 ............................ CCCTCAAGTTCTCCCCAGCCTCTGCCAGCTTTACCA 167397 28 100.0 36 ............................ TGTGTCAGACCGAAGTGCCCGCACCCTTTATTGAGA 167333 28 100.0 36 ............................ CGGAGCAATCGGCAGATTAACCGATGATAACCTGCT 167269 28 100.0 36 ............................ CATCCAGATGACCATTACGACCTGCCTGGTTAAGCT 167205 28 100.0 37 ............................ TTTCGTCAGTAGTCAGCAGGGTCAGATCGCCTTGCTT 167140 28 100.0 36 ............................ GTTGCAGGAAAAAGTAGGCGGTCGAACACCTGCTGA 167076 28 100.0 37 ............................ GTCAGTACCGTGCCGGTGGACGCATTCAGCAATTCCG 167011 28 100.0 36 ............................ GTCCATGCTGATGATGTCCGGCCTGTTGATCTGCAC 166947 28 100.0 36 ............................ GAGAAACGTATGTTTATGACATTCGCTTTTGTGCTT 166883 28 100.0 36 ............................ TGAGTTCGCCTGCCGCGCTCATGACGTATACCCATC 166819 28 100.0 37 ............................ TCAGTATCGCATTTGCTACAGATGTATTTCATTTTTG 166754 28 100.0 36 ............................ CTGCGCCTGATGGCCAGTGCGGAATCCGATGATTGT 166690 28 100.0 36 ............................ CCGCCAACCCGCTGTTGCAGGACGTGAACATCGGCT 166626 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 27 28 100.0 36 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : GGAGAAATACCGCCTGCGCCAGCAGTTGAGCGTGCCCCCTGCTCAACGAACTGAAAACCTGGCTGGAAACGCAGGTCGGCAAGGTGATGAAAGGCGGCCTCACCCGCAAGGCGATGGAATACTGCCTCAACCAGTGGGAATACCTGAGTGGCTACTGCCAACGCGGCGACCTGCATATCAGCAATGTGCTGGCGGAGAACGCCATCCGCCCCTTTGCCGTGGGCCGCAAAGCCTGGCTGTTTGCCGACACCCCGCATGGCGCGCGCGCCAGCGCCGCCTGTTATTCCCTGATTGAAACCGCCAAGGCCAACGGCCTCGAACCGTATGCCTATATCCGCTATCTGCTGGAGCATATCGCCCAGGCCGACACCCTGGAAAAATGGGAGGCCCTCCTGCCATGGAATGTGCCGCTGGAGAAATGTGCGAAAAAAGTCCCTTTTTTTGACAAGGGCAAGTAGGGCGATTTAACGGCGCTTACGATTAACCGATGATAACCTGCT # Right flank : ACCCGATTCCAAGCCAAACTCAGCACCCAGCTCGAAACCAGACCAGATAAAAATAGCACGAACAGAAACACAATAGACATCAAAGGCAGGTAGTTTTGGCTTCATCCAAGGTCGAAGTCAGCTTACAGAACCGTAAAATCACGGCGGTGGTCATCAAGCGGCGTCCGTTTCAATTCCCCCTTCCCTGCTTCGCTCTTGGCAAGATGGCTGACCTCAATATTCTGCCGGTTGGCAGCGCGTATTTCCGTGACACGATCCCCCGGAATCATCAAGCGGCTCAGTTCATGCTGGAGCCTGATAGCCTGTGCATCGGTGATGTCGCCGGTAAAAACAGAATATTGCTCGTGGTTCAGAAAACGGCGCAACAGCTTTTTGAATCGCTTCGGGTCTTATTCCCCGCCCCTTGGGGCGATTCTTCAAACAGCGTCGGAAGGCGCTGTTGAACGTAGCGAGCCACGCAGTGTGTGAGCGAAGTGAAGTGATACCCCGCTTTCGAGTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 171879-170826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH651384.1 Thiothrix nivea DSM 5205 Thiniscaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 171878 28 100.0 36 ............................ AACCTTGTCGACAACCCCATCCAACCTTGTCGACAA 171814 28 100.0 37 ............................ CGGGTACGCTGCACAACAGAGTTGGCTTTGTTGCTTT 171749 28 100.0 35 ............................ CCGTTGAAATACGCCTTATTCTGGAATTTGTTCAA 171686 28 100.0 36 ............................ CCCCGCGTCCGTCGTCGATGTCGTCGTTAGGCTCTT 171622 28 100.0 37 ............................ CCGGGTTGAGCACCCCTGCCGGGTTGCTCAGGAAATT 171557 28 100.0 36 ............................ AGAGGGTTGCGCAGTGATACGGCTGGTGGTTGGCTG 171493 28 100.0 36 ............................ TGGGACATCACACGCAAAATTGAACGCCAGTTTATC 171429 28 100.0 36 ............................ GCAGCACGTAACCGGACAAACCCAGTGCATCCAGCA 171365 28 100.0 36 ............................ GGTGCGGGGCTGCAATGCGGTGTTTCTTCATGGCCC 171301 28 100.0 36 ............................ TATTTTGCAGCATAATCCAGCTTTTTCCAGCGCCAG 171237 28 100.0 36 ............................ GCTGTTCGGGTTCCCCCAGGTGGGGACGGTAGTTGG 171173 28 100.0 36 ............................ CGCGTCTTTCAATGGCGGGTAAACCTCGCCGGGAAA 171109 28 100.0 36 ............................ CACATAGCACTTATGCACCGGAATTTTCGGCACAAT 171045 28 100.0 36 ............................ AATTATCCAGTGCATTGGAAACTATCATAGGGTGAA 170981 28 100.0 36 ............................ CGAGGCTAAATAGTGTGGATGTTGAGCTGATTGATT 170917 28 100.0 36 ............................ TGTGTCAGACCGAAGTGCCCGCACCCTTTATTGAGA 170853 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 17 28 100.0 36 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : GCTTGAAGGCGTGTGGCCAGATAGCCAGTGTTTCCGGGGAAGATTCCACGCCGAGGATTACGGTGGTGGAACCGTCAGCATTCCCACGGGTTGCCCACACGTCCCACATGCGGTTGCGCATGAAACCGTGCGCCGGGCGGCCCTTGCCTTCGGGGTCTGCGCCGAACCATGGCCAACAAATCGGCACGCCGCCCTTGATTGCCTTGCCACTTGCGTAATATGCCTTGTCGCTGACAAACAGCACATCCGCCGCGCCTTTGGGGGTGTATGACAGCAGCTGCCCGGCGTATATCGAAATCAGTGCATCGGCGTGGCTGTTGCTGACCTGGATGCAGGGCACACCGCCTTTGCCTTCGACAAAGGCCAGTTGGTCGGCGATGGCGAAATCTGTAGTGAGTTGTGCGATATTCATGCTGCGTCCTGTGGTTGGGTGGGTCGCGCCGATAGTAGCACACTCCCGTAACGGGAGTATTGCGGGTGAAGGTTTTGTCCCAACTGCG # Right flank : CGGAGCAATCGGCAGATTAACCGTAAGCGCTTCTAAATCCCCCTCCTTTCAGCGCCCCACGTAATCCCGGACACTCAGCCCATCAGCAACAGATTGCATGGGAGAACACGATGAATCCAGGTCAAGATGGGCGTCTGGCGTACTGGCAAGCCCAGCTCCAACGCTTCCAGTCCTCCGGCCTTTCCGGAGTCCAGTATTGTGAACAGGAACAGTTGAGTTACCACGGCTTTGTCTACTGGCGGCGCAAATTATGCGGTACGGCGGGCAAGCCGCCCGGGGATGGCAAACGCCCGGTATTGCCAGAGCCTTCCGGTTTCGTGACTGTCCGCCCGGCGCAGCCGGGGACAGACGCCCGGACGGGCGATGGCCTGGAGCTGTCCCTGCCGAATGGCCTGGTGATCAGGAATATCCACCCCGGCAATGTGGCCTTGCTGCGCCGGTTGCTGGGGCAGTTGTAATGGCCCGTTATTTCCGCCCCGCCGGGGAGATGCCGGACATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 1110563-1109233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH651384.1 Thiothrix nivea DSM 5205 Thiniscaffold_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1110562 37 100.0 34 ..................................... CTGCCTGCCATCTCAAAAAATAAAATAAAATTTG 1110491 37 100.0 35 ..................................... TCAAACGCCAGGGCAATATCCAAAAACCGACTAGC 1110419 37 100.0 36 ..................................... AGAAAAAATAGAAAAAGCGCATCAGTTCAGTACGCC 1110346 37 100.0 33 ..................................... AGGATGCCCACTGAATAAACCAGGAAGGCCAGC 1110276 37 100.0 35 ..................................... CGCAAATGACTCAGAAACGAACGCCGACAGAAACA 1110204 37 100.0 34 ..................................... CGTTTGTGGTTTCAACCTTGGTTGTTTCATCTGT 1110133 37 100.0 37 ..................................... CTCACAACGCCTGATATTGAGGCGCATCTGGAAGATG 1110059 37 100.0 34 ..................................... TTGATGTTTTGCCAGCTAATGCGCGCTTCTTTAT 1109988 37 100.0 35 ..................................... GTTAAGGTATTCTGGCAGATAGTATGAACCCGGTT 1109916 37 100.0 35 ..................................... CGAAGGCTATCAGGCGTTTCAGGGCCTGCTGACTG 1109844 37 100.0 36 ..................................... AACCTTAACGGCGACATTGTTGCAACAGTCCCAGAC 1109771 37 100.0 35 ..................................... AACCCCAGCACGGCAGGCAAGAAATTATTGCTGGA 1109699 37 100.0 33 ..................................... GGCATGAAGTCGGATGGTGTCGAGAAACGTCTG 1109629 37 100.0 35 ..................................... AGCCACGTATTCAACATTCCCTTCGCGGTGACCGA 1109557 37 100.0 34 ..................................... AAATACGACCCGGGCAAGACTTACCTCGGACGAT 1109486 37 100.0 37 ..................................... ACGGGCAACATGACAAAGAGCGCGGCTTGTAGAAACC 1109412 37 100.0 33 ..................................... ATCACCGCTGGGGCGCGGTTGAACCTGCACCAG 1109342 37 100.0 36 ..................................... CTGATGTTTGCCCCCGCCGCCAGCGCCCGCATCTGG 1109269 37 94.6 0 .............T...A................... | ========== ====== ====== ====== ===================================== ===================================== ================== 19 37 99.7 35 ATTCTCCCGGCTTATTTGGTCGGGAGTGGATTGAAAC # Left flank : CTAATACACCCTGAGTTTCATCGGCAGCGTAAGTAAATGTTGATGAACAAAGGCTGGCTGCTACCACGATGGAATACATCAAAAGTTTGAGTCTAATCTTCATGACATTTGCTCCTTAAGAAAGAGACGACATATGTAGCTTTGGAATTTTTATTTTTTATCCACACCTCCTTTGTTATTATGGTAGTTAATATATCCAGTCAAACCGATGATAAATATCAATTAACAGAATCACTGAATGGCATTATTCTCTCCATCTATATTCAGGCTAAATAACAATGCTTTATTAATATTGTTGTGGTATAATTTCCTTGCTCTAGCTAGCCGCGAACCCTTAGCGATGGCAAATTTGCGGAGTAGTTCGCGAAAATTTAAATGATTGATTTTATGAGGGTATTTTTCATGAGTTTTGTGCGTGAACTTGTTTTTCTTCCCGTGCCTCCAAGGTTCGCGCAATCTTGCAAAATATCTTTTAATTTTTATGCCCTTACACAAGGGCG # Right flank : TACTTCCAGTCTCGTTTGTGATCAGGGAGGGTTACACGAACACTTGGGCAAGCACTCCGAAGCGGGCAGCCAAGGTGTGAATGGGGCTACGAGCTTTGATCCCGCTCATTCCCGGCATCATACACCCAGCACTACCACAGCGCGTAATTGCTGTTGAGCGCAGCGAGTGCCGCTGACTCACCATCATGCACGGCGTTCACGCTGAAATCTTTCTTTAACCTGAGTTTTGCTTAAGCGGGGCAGGCTTCCGTCCCCATGGTATGTTTGAGATAACCACACCACCAAACAGCCAAAGGAACGGAAGCCATGGAAGACAGCTTACTGGAATTATTCTGCGACATAGACGATTTTTGCCAGCAGTTCGTGCCGGAGTGGAACCGCCGCCAACTGGCCAGCGGTGAACGCCAGCGCCAGCGTACACAGCAGCTGGCGCTAAGTGAAATCATGACGATCCTGGTGTATTTCCACCGCTCCAGCTACCGCTGTTTCAAGCATTACTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTCCCGGCTTATTTGGTCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //