Array 1 129-1363 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000115.1 Alkalihalobacillus clausii strain BC112 Scaffold11_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 129 32 100.0 36 ................................ CGAAAAAAAAGACCCTAAAAAAACGTTAGGGTTATA 197 32 100.0 36 ................................ CCGGCCGTCCACTGTACGCCGTTTGAGACCGGACTA 265 32 100.0 34 ................................ CGCGTAAAAGCCCGATCCGACGACGGTAAAGCCG 331 32 100.0 36 ................................ GTCTACTTAACTCTTGGACACTTGGAATGTCGTGAG 399 32 100.0 36 ................................ ACGTTAACGGGCCGGGCGTGGTCGTCTACATCGCGC 467 32 100.0 37 ................................ CAACTCGGCATAACAACTTTCAGGTCCTCCATTGTTT 536 32 100.0 34 ................................ CCTGTTACCTCTTTAGAGAGCTTGTTAAAGCTAT 602 32 100.0 33 ................................ TTTTTTTCTTTGATTTATATAATCCTCAATCAT 667 32 100.0 35 ................................ TTGTGGTGTCATACGTGCATAAGCGTCACGATCAA 734 32 100.0 35 ................................ GTAAAGTCTCGCAGGGAATCGCCGCCCGCCTCCAT 801 32 100.0 33 ................................ AAGAAATTTAAATCCTCCACTTGGTTGAATAAA 866 32 100.0 35 ................................ GTTAAGGCTCATAATAGTAAATCCTCCAATATAAT 933 32 100.0 33 ................................ AATAAACTGCAAGATCACGTTATTGCAGATTAC 998 32 100.0 36 ................................ CGCAATATGAAGCCTTTAACCGCGGCGAATTATCGG 1066 32 100.0 34 ................................ TCAATATCTCGTACAAAGTTTGATACCTCCGCCA 1132 32 100.0 35 ................................ GCAGACGTTTAATGCCAACACGGATAACACGTTAG 1199 32 100.0 34 ................................ GCTATTAAACAAGCGCAACTCTGATAGCTTCCGC 1265 32 93.8 35 ...........A..A................. ATCGAGCGGAAAAGAAGTTCAAGCTTTTACGGAAT 1332 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 99.7 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : GCTCAAATATGAGGAAATATGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCTG # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACATTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 125-488 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000117.1 Alkalihalobacillus clausii strain BC112 Scaffold11_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 125 32 100.0 37 ................................ AACCACAAATTCCCCTCTGCGAGAGAAGCCTTAAAAA 194 32 100.0 33 ................................ AATTTGAAAAACACCCGAATGATTATTCATGTA 259 32 100.0 35 ................................ GATTTCCTGGTTATACATGACCAAGGCGCTCCTGC 326 32 100.0 34 ................................ GATAAGCGATTTCCGCGTTTCGCATCGCCCTTGC 392 32 100.0 34 ................................ GTCCCTCAGAAAGAATTTGAGTTTATGGGCCGTA 458 31 96.9 0 .........................-...... | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 99.5 35 ATCGTACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : AAAATATGAAATAATGTGTGTAAAAGTGTTGAAATGTTGTTAGTTTCCCATGATATTATAAAGGAAAGCAGCGGATTTTCCCTAATATTTATTGTTTTACTTCAAAAAATAGGGGGATTTCGCTA # Right flank : ATATTTTCAATTCGATACAAATGTAACCCCGTTTTATTTAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAAGTACATTACTTCGCCCGCAGTTTTAGCAAAATTTGACGAGGATAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 132-1028 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000106.1 Alkalihalobacillus clausii strain BC112 Scaffold11_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================= ================== 132 32 100.0 33 ................................ AACAAAGATAACCCTGTCCCGCTGCTAATCATG 197 32 100.0 36 ................................ AATAACAAACGACTTGGCGGCTTTTTTGACTGAGGC 265 32 100.0 34 ................................ GATGCTGATGAAGTCGCGCCTAGCCACCGTACAC 331 32 100.0 33 ................................ GTTTCCGCAGCTACATATATAGTCAAGATAGTC 396 32 100.0 34 ................................ CCCGAAGGTAAATAAAATTTACTATCCTAAAACA 462 32 100.0 34 ................................ ATAACCGCGGTCCAAGTAGTCGTTATGTGCTTGG 528 32 100.0 35 ................................ AATAGGCGGTTCCAAAGTTATAAAACCGACAAAAA 595 32 100.0 36 ................................ CATCTTCTGAACAACCGTAATTAACGGAACCTCTAC 663 32 100.0 33 ................................ CCAGCCTTGTTCGACCTCTACCTTTCCCTTTGT 728 32 96.9 35 ...........A.................... TACCACTGCTTTTACGAAGTACTCGTTTAGCTCCT 795 32 96.9 34 ..........A..................... CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 861 31 78.1 105 ..........A..C......-.TC......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAGGTCACACGTTGTGTAAGTAATAGAGTCAAATAAAAGTTTCTCTGGCCCACACTCTTTTTCATTGCAAAAAC 997 31 78.1 0 ............T........AC..-...TCA | A [1007] ========== ====== ====== ====== ================================ ========================================================================================================= ================== 13 32 96.2 40 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TGGCCTTAAATATGTGTTAATATGTACAAAAATGTAATAATGTGATCTTGTTCACTGTGCTATGATAGGAAATAGAGGCAAAATCAAACGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCTG # Right flank : ACTTCCACCTCTTGTTTGATTCCTTTCCTAACAGACCTATTTTCTTCTTGTAAAAGGTCTTTCCGATAAATGCTAGTCGGTTTGTTGTTGAAGGGTTTGCAACTTCAATTCGTGTAAGGAGAGTGTAAAATAGCGTAGCCATTAAAACGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCGTGCGGCCGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGTAGATCACCCATAT # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14720-15552 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000106.1 Alkalihalobacillus clausii strain BC112 Scaffold11_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14720 32 100.0 35 ................................ TGTAGATGGTGCAATGCCAAAAATAATCGAACAGG 14787 32 100.0 33 ................................ AAAAATACACTACCTGTGCCGATAGTCCTTGAG 14852 32 100.0 35 ................................ AACACAGCTTATGATAATCTGATTACCTCCATTAA 14919 32 100.0 34 ................................ TATCCGAATACTCTGTAGCGACGACATCATCCTC 14985 32 100.0 34 ................................ AGCCCCTATATCGTCAAGGACCAATAAATCACAA 15051 32 100.0 36 ................................ CTTTAGCTTATTAATTACGTTTTCCATTACTATCGC 15119 32 100.0 36 ................................ AATATACAAATCAGTTATGCGTTCGATGAATTCTTT 15187 32 100.0 34 ................................ AAAGATCACTGCACACCCACCAGTGCGTGACCAC 15253 32 96.9 35 ..........A..................... AACGATGTCCATTAGGTCGTTTAACGAGCAATTAA 15320 32 96.9 35 ..........A..................... TCGAAAATGGCGGCGACTTGCGCCACTTGCAGAAG 15387 32 96.9 35 ..........A..................... GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 15454 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 15521 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 97.6 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATATGCCGTCATAAAAAATACCTCCTTTCGAGCTATATAATCAATGTTTAGGATGCCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGGAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAAATGATTCTTGATTTCTTCAATAAGCACTCGCTGAAGCTCACTTTTCTCTAGTGCGAATCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACTGCCTCGAATATGGGTTACTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : AAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAAC # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9740-10307 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000118.1 Alkalihalobacillus clausii strain BC112 Scaffold11_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9740 32 100.0 34 ................................ TGAAGACAAATTTTTTTACGAAATTAAGTTTGTC 9806 32 100.0 36 ................................ TGATTTAACGGTCGTTAATGCCGCCCGTGTATCTTA 9874 32 100.0 36 ................................ CATTGTGGTTTGGTCTCGTCTATTGTCAGATATACA 9942 32 100.0 36 ................................ CATTTCCCTTAAATCTAGAACCCAAGCCTTTTCTTC 10010 32 100.0 36 ................................ GGTGGTGGTAAGCACTAATGCAGGAGACGAATTCAT 10078 32 100.0 35 ................................ CGATGCAGACGACGCTTAAAAAGCAATTGCGTAAA 10145 32 100.0 34 ................................ CTGAGAGCGCTGCCAAAGGGGCGCAAGTCTACGG 10211 32 100.0 33 ................................ GCCTTCGTCAGAAGTTCCTAGTCTAGCGTTAAA 10276 32 90.6 0 ...........................T..TA | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 99.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CGCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTACAAAACTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAATTAACATCATTAAAACTTGAACTCAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTACCGATTGGGAAACAACTATAAATCGAAAGTGGAACACATTGGTGCAAAACCAACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGTACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATCGAAATATGTGTAAATGTGTATTAATTTGAAATAAGATGTTGTTGATTTTAAATAATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : AGTAGGGGTGGCAAAAGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCCTGATGATAAAGGGAAATTTCTCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATGACAAAACTGCTAAAATTGGGAGTTGAAGATCGAACCCTAAATTGTGGAAAATATTTGTGGGTAGGTCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGGTCACCCGCACCAAAAAAGAGTCTGAATGTGAGATAATATGTATTAAAGTGTTAAAATGTTGTGCTCTTTCCATGTTATGATGAAAAAAAGGAGCGACTTTCCTTATTATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCTGTCGCACTCTATATGAGTGCGTGGATTGAAATATATGGTCAATCATTTGTTCGACTGCCCGTATTTTGTCGCACTCTATATGAGTGCGTGGATTGAAATAAAACAGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10700-11662 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000118.1 Alkalihalobacillus clausii strain BC112 Scaffold11_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10700 32 100.0 35 ................................ ATATGGTCAATCATTTGTTCGACTGCCCGTATTTT 10767 32 100.0 33 ................................ AAAACAGTAAGCTTGCCGAATCGCTCGCCGGGT 10832 32 100.0 35 ................................ TACAGCCTCCTTTGTTTTTTGTTTATCTAGCTCTG 10899 32 100.0 34 ................................ TCTAATTGAGTTGTCCATTCTAAATTTTGAACTC 10965 32 100.0 35 ................................ CCAGGGAATAACCGCCTATCTGATTGTTGCTTATT 11032 32 100.0 34 ................................ TTTTTTAGCTCGGCCAATGTGATAGTGATCGAGT 11098 32 100.0 34 ................................ ATTTGAAAGTAGGGAATTTGAAAACTTTGGCCAG 11164 32 100.0 34 ................................ TTCGCGATAAGGACGTAGCGGCGCTCTTTGTCGG 11230 32 100.0 35 ................................ GCAACCTGACGAGCGGCGCGGATTGGAGATATACC 11297 32 100.0 34 ................................ ATCGTGTCAACTTCCCTCAAACGATAGACCACTT 11363 32 100.0 35 ................................ TTTATCACTTCTATGTTGATTGGACTTGGAATTTA 11430 32 96.9 34 ............G................... GCCTGTTGTATTTCCTAAACTTGGAGCAACTACA 11496 32 100.0 35 ................................ ACTTTCTCCCCTCCTTCATCTGCTCCAAAGCTTTT 11563 32 90.6 36 ..............A..C.......C...... AGAAAGAAATCCACCAATGGATCATTTGTAGAAAAA 11631 32 78.1 0 .....C...GT..G.TA.....A......... | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 97.7 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CAAGTCTACGGGTCGCACTCTTCGTGAGTGCGTGGATTGAAATGCCTTCGTCAGAAGTTCCTAGTCTAGCGTTAAAGTCGCACTCTTCGTGAGTGCGTGGATTTAATAGTAGGGGTGGCAAAAGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCCTGATGATAAAGGGAAATTTCTCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATGACAAAACTGCTAAAATTGGGAGTTGAAGATCGAACCCTAAATTGTGGAAAATATTTGTGGGTAGGTCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGGTCACCCGCACCAAAAAAGAGTCTGAATGTGAGATAATATGTATTAAAGTGTTAAAATGTTGTGCTCTTTCCATGTTATGATGAAAAAAAGGAGCGACTTTCCTTATTATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCT # Right flank : TGCCCAAAGACATCTTCTTCCATTTCAACTTTGAAGTTGCACTCCATATGAATGGAAGTCGTCATACTTATTGTTTGAGCGGATGGTTTCAACATCCGCTCTTTGGCGTGAATCCTTTTTTAACCAATGGGCTTCTTTGACAAGCGTCTTCTTCGAAAGCCATAGAGCGATAGGAATCGAAGGAATCACAAATGATTCCTAATGAGAAAACGATGATGATGTCTAGAGGTGCCTTCCTAAAAAGTGATGCAACTACCGATCAGTCCAATCAATCTAATAAACCCTTAAAAAAACACTACCAGATCTTAATGCAACAGGAATATCTACACCCTTGCTTGACGCTATAATGAGTAGACATATGAGAGGAGGAGTTAAATGAAATCTCCCTTGAAAGCGCTTACTGTTTCGGTGATTTTATTGTTGGCCGGTCTGGTTTTGGGCGATGATCGTATGGAGGCTCATGAGTTGCCGTTGTTTCATTTTGAAAAAACGCTGATTGA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 21287-21853 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000118.1 Alkalihalobacillus clausii strain BC112 Scaffold11_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 21287 32 100.0 37 ................................ ACTAATATCGACAACATTTGGTTAGTGAGTGAGGGAG 21356 32 100.0 36 ................................ ACTTGGGGGAGTAATCCCCCCTCTCGTTGGGATGAA 21424 32 100.0 34 ................................ TGGCACCTCACAAGGGTGCCGTGCCTCTACTAAT 21490 32 100.0 35 ................................ AAAAGCGCTACCGAAGTTTATGATACAACTACCGC 21557 32 100.0 35 ................................ GGGACATTTGCCGTATAACCCGCCGCCCGCAAATC 21624 32 100.0 35 ................................ GAGGATTTATTCGGCAATGAATCGCCTATGATGTA 21691 32 96.9 34 ..........A..................... TAAAAAGGTAGCTCACTTTTGTCCTTTATGTGGA 21757 32 96.9 35 ..........A..................... ATTGAATACAGCATTACATTCATTGAAGAACCTTT 21824 30 87.5 0 ..........A.............--..G... | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 97.9 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GAAAAGTGCCTCCCACGAGAAATTGATGTGACGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTGAGCTGATGAGGGGAGGGGTATTTTCGAATAAAAGGATTTAGCATTGGTGTTTGAAGAGGGACTACCTTTAAAAATGAGACGAACAAGAACTCCAAACATTGGGTTTTGGAGTTTCTTTTTTGGTGTTCGTGGTATTAAAATGTGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATCACTAGATCACCCGCACCGAAAAAGAGTCTGAATATGAGTAAATGAGTATGAAAATGTGAAAATGTGGTTTATGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATTTTATCTGTGGTTTTATTTCCAGCAAATAGGGGACTTTCGCT # Right flank : GTCAACACAAAACTGGACAAATTTTTAAAGGTGTAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 516-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000206.1 Alkalihalobacillus clausii strain BC112 Scaffold41_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 515 32 100.0 33 ................................ ATCAACGTTGTTGTATGGCGCAAACCCGCCGAA 450 32 100.0 34 ................................ CGTGTAACTGAGTGCCGCCTCTAGAATTTTTAAG 384 32 100.0 34 ................................ CTTTACACTCTGTCTTACGACAGACAGGTAAATC 318 32 100.0 35 ................................ GGATGTACATAGTTTATATCCCAACGTGTGTCTAC 251 32 100.0 33 ................................ GGCGATTTCGTAGGATCAACTAGCGACGTTCGC 186 32 100.0 37 ................................ GCCGCATTATGGGACGTTAGATCGTCCCCGGTTCAGA 117 32 100.0 36 ................................ GTTTGTGTACATGGATTGGGAACTAAACGAAACCAG 49 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 100.0 35 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATATTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGC # Right flank : TTAACGGATATATCAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 289-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000205.1 Alkalihalobacillus clausii strain BC112 Scaffold41_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 288 32 100.0 35 ................................ CCCTCACACTTCTACTTTAAAAGTAGTGCCGCCTT 221 32 100.0 33 ................................ ACATGCGTTATATCGTTGTGAGCCACAATTCTG 156 32 100.0 35 ................................ CAGTATCGTGTGAAAATGTCCAATCGTATTGAATG 89 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GGAGTCTCGTTCACTTAGGAAAAGTGAGTTCATGGCTTTTATTAGTGATTGTTAGTTTCCTGATTGTAGCGACATTAAAACAAGTGAAAGGGAAGAGATCCACTGGTGTAGATGCTAGTCAATCTTTTATAAAAAAGCAGTGAGTGCTTTTTTATAATGAAGAAACAACCATTCTTACTGTTAGTATTAATGGAAAGAAACATAAAATGAATGAAGGACAATAGATCGAAAGGGGCGATATAAGAATAGAAGGGAACAACATCCACAGTTTGATCTTCTTAATCTTCCAAGAAAAAGAGGAGCAAAGAAGCAGCATTTTTAGTGCGAACCCCAAGCGCACATAAAATTACTAGACCACCCGCACCAAAAAAGAGCCTAACTATGGAAAAATATGTGCGGAAATGGTTAAATGTTGTATATGTCCCATGGTATGATAGAAAAAAGAGCAACTTTTTCCTATTATTGATTGTTTAGATTCCAATAAATAGGGGAATTTCGCT # Right flank : TTTAAGAAGTGGCATGATGGAATGTCAACACAAAACTGGACAAATTTTTAAAGGTGTA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4814-4120 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000205.1 Alkalihalobacillus clausii strain BC112 Scaffold41_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4813 32 100.0 35 ................................ TTGTCGGAGGCGCACACGATTCATACGCGCTTTAC 4746 32 100.0 33 ................................ TGCCCGCGTTAAGAAACGTAGGCGTAGCGGGCT 4681 32 100.0 36 ................................ CTTTACTGAGGATCAATCTAAAATTAAAGTCATTTA 4613 32 100.0 34 ................................ TAAAGAGCAATAGCAATACATCAGATAACGCTGC 4547 32 100.0 35 ................................ GATCCTTTACGAAGCCGACCACGCGGAGCAAGTCG 4480 32 100.0 34 ................................ GGCATGCCTACGTCTCCTTGTACAGTATCAAGCA 4414 32 100.0 33 ................................ GAGGAAATCAATAACGCTCCACAAACGTTTTCT 4349 32 100.0 34 ................................ GCTCACTCCTCCGTGTCTCCATTTCGGTCGCTAC 4283 31 96.9 35 ..............-................. TGCTGCAAAATCGTTCTATCACCTGATGCCTGATT 4217 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 4151 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.4 34 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : TTGAAATCCTGTCCACTGAAGCACATGGGTATTTGCTTA # Right flank : CTCGCCACTGCTTCTAAAGGAAATGCACAGTTGTAGCGGTGCTGGAAAAATAAGTTCTTTGTCGTGATGATAGAACAGCAGCTCATTGCTTTGGCAGTTAGTAAAACATGTCTATCTTCACAGTGATTCCAAATATTTACCATTTGTCTGGATCGGTGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCCGCTTTGAGACATGAATCGAATGGAAAATGGTATGGTCTTGTAATGAATGTTCTTCCAGAAAAATTAGGGTTGGATGGAAATCACGAAATAGACATTCTGAATTTAAAATGTCTTCCTGAAATAAGTGGCAGTTTAAGAAATGGAAAGAGTATTTTACCTGGATATCACATGGATAAGGAAAATTGGATATCAATTGTTTTGGAACGTATA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8070-7100 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000207.1 Alkalihalobacillus clausii strain BC112 Scaffold41_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 8069 32 100.0 34 ................................ ATATATTTGTTTGTTTCCATGCCGTTGTATTCCG 8003 32 100.0 33 ................................ CCGTCGCTCCGCTCGCTCTTATAAGCCTGCCCC 7938 32 100.0 36 ................................ GCTCCTCTTTGTTATTTGTTATTTATACTGTAACAT 7870 32 100.0 36 ................................ TGACCGAAATAAATTTGAGGTTAAGCCAGAAGGGGT 7802 32 100.0 35 ................................ CATCAATCCCTACACCTAGTAAACCGAATAGAGGA 7735 32 100.0 35 ................................ ATTGGTCCTTGTTAGAGGAGCTAAACAAGAGATTT 7668 32 100.0 37 ................................ CAAAAATAAAACCCCAATCACACAAAAGGAGCCAATC 7599 32 100.0 36 ................................ AAAGGCTTCGTGCGTGGCGTTAGGTATCAGCCCAGC 7531 32 100.0 34 ................................ TCCTTTTTTATGTTTTTTAGTTGGATAAAGAGGA 7465 32 100.0 36 ................................ CTCTACGATATACACCCGACCATTCGGCACAGCGTC 7397 32 100.0 34 ................................ TTCTCCAGCGCTTTTTGGAGCTTGCGGTCAGATT 7331 32 100.0 34 ................................ ATTGTCCCAAACAGCACGTCGTACAAACGCCTTT 7265 32 100.0 35 ................................ GTCCAATTCGCGCAGTAGACGGTTAATGCGCTGCC 7198 32 100.0 35 ................................ GTGGTATCAAGTTCGACGTAGAATCAGCGAATAAG 7131 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTACTCAAATATGGTTGAATGTGTGAAAGAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATATAGGAAAAGAGCGGTTTTTCTCTAGGATTCATCCATTGGTTTCCAAAAATAGGGGGATTTCGC # Right flank : ACAAGTTTTTATCCGATTTTATTTTGGAATCGATGTCGCACTCCTTACGAGTGGCTTGTCTAAATAGGGTCGAGAGCAGGCCCTACCGCGCTGTTACCCCAGCCTGCTCGCGGAAAATCCCTATTTATGCAATCTTGCAATTTCCATGCCTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGTCTTAATAGAAAAAAGGACTAGCTACAGGAGGGATTGGAAATTCGTACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCTAATACAAGTTTTGTTGCTGAAAGGGATGGAACACCTGTTGGCTTTCTAATCGGATTCTTTTCTCAATCTCATCAAAAAGTAGCCTATATACATTTCGTTGGTGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCTATTATACAATTGATTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6624-6260 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000208.1 Alkalihalobacillus clausii strain BC112 Scaffold41_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6623 32 100.0 34 ................................ TTTTCATCACTTTCCACAGCGGCAAGGATTTCGG 6557 32 100.0 34 ................................ GCCGCTATTCGTTAGCTTGCCTTGCCCCGCGAAG 6491 32 100.0 34 ................................ TACAGTAGGGATGAAACCGAACGTCTTGGCCTGA 6425 32 100.0 35 ................................ CATATAGTCCTGCCAGAAAATTTTCAGGATGTCCG 6358 32 96.9 35 ..........T..................... CCGTTTTTAACATAATCCATCATGATGCGCTGAAA 6291 32 75.0 0 ...........T.............AAATGTG | ========== ====== ====== ====== ================================ =================================== ================== 6 32 95.3 35 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : TAGACCTTAGAGCATTTGTCCAACTAAGTGTAACCTATCCATGGATTGAAATAATGGAAGCAGTAGTGTTTCCGCCTTTTCTAGGT # Right flank : GGCTTAAGATCCTTGCACGGTGTGGCTGTGTTTCCCCCATCTTATAAGTGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACAACTAATAAAGGTACAGAAAACCAAATAAGCAATATGAGCGCACCTACGCCCATATTGCTTATTTTCGTCTTTGTTGCCTATTTTAACGCTGGCCAAAATGCTTTATTCGCCTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTTGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTTGTGT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 65-294 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000228.1 Alkalihalobacillus clausii strain BC112 Scaffold55_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 65 32 100.0 34 ................................ ATTGATCTCCGCCTACCTTTTTCAAAGTTTCAGC 131 32 100.0 34 ................................ CCTGACTTTTTAATCATGCCATATCCGGTAAAAA 197 32 100.0 35 ................................ TCAACGTAGTCATGGAACTCTGCAAACGTCGTTGC 264 31 78.1 0 .........C.T.......T...A...-..CC | ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.5 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : TAGACCTTAGAGCATTTGTCCAACTAAGTGTAACCTATCCATGATGTTTACAGAGAGAAGTGTGG # Right flank : CAGCGCAATCAAAGGCGGCAACAAACTAGCGGTTTTCCGCATTGCCGCCTACGACAAGGAAAAGAAGAAACGGGTTTCTTCAAAGCAAAAAAAGCTTATTTATCAAAAATAAAGACAAACTCGAAGAATTATATGCCAGTCTCCAAAAAGGACAGCTAATCTCTGTCGAGCACAAAGAAAACAACGGATATACAAACATTTATGGTCTGATGGATCGCTCTTACGCAGACAGACGCAAGTCAGCGCAGAGAGGACAGGAAGCGGAAGCAAAAAGAGTGACTGGTCGTGCCAGTCACTCTTTTTTTGACCTATACTTCGAATAAATATTATAGACAAGCGCTCACAAATTCGCTATTTATCACAGTTTAATCCTTTGTGAACCGATCTTGTTCTTCAAACTCAAAAATGATTGATTTTACATTGTGTAGATTCTCTTCTGCAAATGTATCTTGATCATTCTTATCCTCTATATACACCATTGCATTGGTCTCTATTTGATA # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 128-424 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQP01000229.1 Alkalihalobacillus clausii strain BC112 Scaffold55_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 128 32 100.0 34 ................................ CGTAAACAAACTCTTTCTTGATCGGTATGCAAAC 194 32 100.0 36 ................................ CCGTAGCGAAGTGGGTTATATGTCAGATTTGCCGTA 262 32 96.9 33 ..........T..................... TGGTGTAAGGGTTAACTCTCCGCCCTCGTTTTG 327 32 93.8 34 ..........T.A................... TTCAGGGTCTTTAAGGCGTATTTTCACTTTATTC 393 32 71.9 0 ..........T............CTCGTTCG. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 92.5 34 GTCGCACTCTAAGTGAGTGCGTGGATTGAAAT # Left flank : AAGCTTAAATATATAATATGTGTAATGATGGTAAAATGCTATACGTATGCCATGATAGAATAAAAGAAAAGAGCGGCTTTTTCCTATAATTGATTGTTTTCCAGCCAATAATTAGGGGGATTTCGCTG # Right flank : TATGCAACCTAATAACCAGTAGGTTATCGACGTAAGGCATTTGGGAGGCGGATCTGCCATAAAACGAAAAACAGTAGTTTTAGGTATAAGTGGGTTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGAATATGTGCCAGGGGGAACTCAATTAAAAAAGAATGAAAGAGACTCGATTGATTATTGGACCAAAGACAACATGAAAAAAGCTGTTCCAGGGGCAGGAATGGACGAATAAGCCTGCTCCTCGAACAGCTTTTGCTAACTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAGCGGTTAAACGGGGTGAAGTATGAAACTGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGACAATTTTCATGGCTGCGATGTCTTTTTTGCAATTTAACAAATTGGCTTGTTCTCTTGTCACGTTGACG # Questionable array : NO Score: 8.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTAAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //