Array 1 2084732-2085927 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025824.1 Akkermansia muciniphila strain EB-AMDK-8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2084732 31 100.0 34 ............................... TCCCAAAAAGCGGTGGATATCGGCAACGTCATAG 2084797 31 100.0 34 ............................... CACATGGAACAATTTAAGGCCAAAAGAATCCAAA 2084862 31 100.0 34 ............................... CCCGCACCGGCAAGGTAGAGACCGTCATGGAGAC 2084927 31 100.0 34 ............................... TTCGCAAAATCATCCTCGCATGCCCGTCCGGTAG 2084992 31 100.0 34 ............................... TCTCAAAAAGCGGTGGATATCGGCAACGTCATAG 2085057 31 100.0 34 ............................... CCATGTACTATGTTGCCTGTCATCCCACAAGGGC 2085122 31 100.0 34 ............................... AATAGGGAGCGGGAAATATTGAGAATGAGAAGCT 2085187 31 100.0 34 ............................... TTTCTATTGTTTTATTGTTGCGGGGGTTGCCCCC 2085252 31 100.0 33 ............................... TCTTGGCGTATAGCCGATTGCCCTTCCATGTCA 2085316 31 100.0 34 ............................... CGTGACTTACGGCGCGGTCTTCACCCTTTAAAGG 2085381 31 100.0 34 ............................... CCATTCACCCGGCCGGGTGAAGAATGATTTGAGA 2085446 31 100.0 33 ............................... TTCCTTGGTATATATCTGCCGTCTATATGTGGA 2085510 31 100.0 33 ............................... ATAGTATTATTCTTTCTATTGTTGTGGTTAGGG 2085574 31 100.0 33 ............................... CAATCCGATACAAGACAATGTCATCTTTCTGGC 2085638 31 100.0 34 ............................... TATGATATAGACGGCACTATATATTGTATGGTTA 2085703 31 100.0 34 ............................... CTTTCTTTTAGTGGGGGTTATGCGGGGGTCATCC 2085768 31 100.0 33 ............................... TGGCGGGGTAGATGACGGCGGAATATGCAACTG 2085832 31 100.0 34 ............................... CTGCTCGAAGAACAGGTTAATTTCGGCGGGGTCA 2085897 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 19 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CCAGGCCGTTCCGCTATCTTTAATATTTAATGAGGAATGACAGGATAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGGAGGATCAGACCAGTCAAGAGCTATCTTATAAAAGTCGGAGCTGAAAAGAGGGTAAATGACAAGTATCTGATATAAGTACACAAGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGAGTAGGTGATAGAGCAACGACAAGGTAAAAAATCATGATAGGATGCCCCGCATGTGTACACCTACATATTGTATCCCCTTGTACGGCTCCGTTACCGTTATATCCCCAGCAGACCGGAAGAAAAAGAACCCGCAAATTTATCACCTTCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAGGGAAGTAAAACGACATGCTGGGTACGGGACGTGCTCAATAACGTGTGGGTGATTATCCACGAAGACGAGTGAAACAGGAAAACAAAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2119284-2120485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025824.1 Akkermansia muciniphila strain EB-AMDK-8 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2119284 31 100.0 34 ............................... GACGCGATGAGGCGTGCCGTCCGGTTGCCTACAC 2119349 31 100.0 34 ............................... TCCTACTATTCCGATAGGGATTGTGATTGAAGGT 2119414 31 100.0 34 ............................... CGGAACAAGGAATCCCTACTAAAACGGTAGGGAT 2119479 31 100.0 35 ............................... CCACAAGCGCACCATGTCAGATTCATCCAACGCAA 2119545 31 100.0 35 ............................... TGCAACGGAATCAGTATGATATGCCACCGTTCCGC 2119611 31 100.0 34 ............................... TTTATCATACAGGGGCAAGCCATAATCGGAACAA 2119676 31 100.0 34 ............................... TACCAGCAAATCCGTTGAAAGGGCGAAAAGCCAC 2119741 31 100.0 34 ............................... CCGGTGTAAGACAATCTCCCATGTACTATGTTGC 2119806 31 100.0 34 ............................... ATAAAAGTCCGGGGGGTGTACGTCTACCGCGCCC 2119871 31 100.0 33 ............................... TATTAGTTTATTGTTGATTGATTTTTAGAGCGG 2119935 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 2120000 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 2120065 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 2120130 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 2120195 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 2120260 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 2120325 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 2120390 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2120455 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 19 31 99.5 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : TTGAGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGAGTCTCCTGGATGACCGCGCCCCGGAAGATTGGACGATTGGACGGGAGGTGTTGGCCAGGGTTCCGGCAGCATTGTGCCGCATTGATGAGCCATGGCGTAAACGTTCCCCGTGGAGTATATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGTCCAACCAACCCGCCAGCGAACGGGCCAGGGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGAGTGGCCAGGGAGGACGACGAGGCGGTGGACTGGGGAGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCCCCTGCACGGAGCAGTCAATTTGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACATTAATGGAT # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2610853-2608272 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025824.1 Akkermansia muciniphila strain EB-AMDK-8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2610852 33 100.0 34 ................................. GCATGGGACTGATAGAAGGTGATGAATATTTCCC 2610785 33 100.0 34 ................................. CCATGTGCTATGAGCCTTATCATCCCATAAGGGC 2610718 33 100.0 34 ................................. CCCGGCAACCATGTTTTCCCCGGCAACCATGTTT 2610651 33 100.0 35 ................................. CCCGCACCGGCAAGGTAGAGACCGTCATGGAGACT 2610583 33 100.0 34 ................................. ATCCGCAATGTTGAAGGCACGGCGGGCGGCGTAT 2610516 33 100.0 34 ................................. CGTGCATGTGTTCTGTAGCTGATTGTGAGAGTTT 2610449 33 100.0 34 ................................. TTTTAGCGTAAAGCCGATTGCCCTTCCATGTCAT 2610382 33 100.0 34 ................................. TTTTAGTTTAGTTTAGTGTTTTCTTTTCGTTGTC 2610315 33 100.0 33 ................................. GACAACACTCTAAAATCTGATAAAGTGAAAGCA 2610249 33 100.0 35 ................................. AAGAATGAGGAACTTACGATTGTGTCATACAAATT 2610181 33 100.0 33 ................................. TACCGGGGGGCGGGACTATATGCTTACGTTGAA 2610115 33 100.0 34 ................................. TTTCACTCGTACTGTTTGCGGAAACAATCGCACA 2610048 33 100.0 34 ................................. TACTGATAAGCTCGTAGACCTTTATACCTCGCAT 2609981 33 100.0 34 ................................. TTTAGTCCAGCGCACCCCGGCAATGTAGTCCAGA 2609914 33 100.0 35 ................................. CACCATCATCTACCCTACCGGGGAACTAGTGACTA 2609846 33 100.0 34 ................................. TGCGTATAGGACGAGGGACAAAATGCCCGCGCCG 2609779 33 100.0 34 ................................. TATTATTGATTGTTGCTTTCATAGAGCGGCGTAA 2609712 33 100.0 34 ................................. CCGTGGGACGTTGCCCCCGCCCTTGAGGATTTGG 2609645 33 100.0 34 ................................. ATTGTCATTTAATTTGATTTGATTCTTCATTGTT 2609578 33 100.0 34 ................................. ACTATATATATATAAGAGAGAGACCGGGGAAACC 2609511 33 100.0 34 ................................. CACAGGATGACGCCCCCGCCCCCTCACGGAATCA 2609444 33 100.0 34 ................................. CGAACACATGCACGGCATTGCATGGCTCGCAAGG 2609377 33 100.0 33 ................................. GCTTACATTGAGGGTGATAGCAACGGCGGGCGT 2609311 33 100.0 34 ................................. TCTGTGACGTATGGGGCGGGGTTGCCCGCTGATA 2609244 33 100.0 34 ................................. AACGTTTTTGGTAGTCACAATGTGGTATCCATTG 2609177 33 100.0 34 ................................. TCTTGGCAAAAAGCCGGATTCCTTTCCATGTCAT 2609110 33 100.0 34 ................................. ACCAGCGTTTAATTTGATTTGAGTATTCATGGTT 2609043 33 100.0 34 ................................. ATGGGAGTTCTACGAAAACGGGGACGGCGTCCTG 2608976 33 100.0 34 ................................. ACCCCCGGACAAAATGAACACTAAATAAGATAGG 2608909 33 100.0 34 ................................. CGGTTGCAAGAGTTTGCCCGTGCATCGTACGAAT 2608842 33 100.0 34 ................................. CGGTGGCCGCCGCTAGTGCGGCGATTAATCCTAG 2608775 33 100.0 35 ................................. TGGTTGCGTTGTAACATGTTAAGCATCTGCGTGTT 2608707 33 100.0 34 ................................. TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC 2608640 33 100.0 35 ................................. TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA 2608572 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2608506 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2608440 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2608373 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2608350] 2608304 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 39 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //