Array 1 274402-275212 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWPS01000008.1 Listeria monocytogenes isolate LmNG3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 274402 29 100.0 42 ............................. ACACAAATATGAAAAAACTTCTATTAAAAGCAATTCCATCCT 274473 29 100.0 36 ............................. AAACCTATCACATTTAAGTATTTAGAGATTCCTAAA 274538 29 100.0 36 ............................. GTAGTTTGCGAACGTTTAAAAACATAATTTGAAAAC 274603 29 100.0 35 ............................. ACAGATCAAACTCCGGAAGGGTGATTGTAAATGGC 274667 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 274732 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 274796 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 274859 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCCCT 274923 29 100.0 36 ............................. AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 274988 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 275052 29 100.0 37 ............................. TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 275118 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [275141] 275184 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ========================================== ================== 13 29 96.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 291506-295052 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWPS01000008.1 Listeria monocytogenes isolate LmNG3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 291506 29 100.0 34 ............................. AGTTTTAGAAGTATGTTAGACGTTGACGAAAATC 291569 29 100.0 35 ............................. TCAAGCTGGTATGCACTTTTTGAGGTAAGCTATTG 291633 29 100.0 37 ............................. GAAAAAGAACCAGTTAAAGAACCCGTGAAAGAAGAAC 291699 29 100.0 36 ............................. AAAGAAAACTTGCAGCAGAATGACGCAAATCATGAA 291764 29 100.0 38 ............................. AGAAATTCTCATGGCGCTAATAACCCCATGCCAGACGA 291831 29 100.0 34 ............................. CATTTCAATCACTTCTTTTGATGTAACATTAAGC 291894 29 100.0 36 ............................. TGTAACTGCAAACGTCTTTCCGCAAATTCGTGTAGT 291959 29 100.0 36 ............................. TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA 292024 29 100.0 37 ............................. AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC 292090 29 100.0 36 ............................. TATCAAATTATCTGCGAAGAGGGAAAACTAGATAAT 292155 29 100.0 36 ............................. AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT 292220 29 100.0 37 ............................. GTTTATAGTATGTAAAACAAACACAGGAAAATATATC 292286 29 100.0 35 ............................. TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT 292350 29 100.0 37 ............................. GTTTCCAGTTTCTTCTATATAAACAACAAAAATAAAA 292416 29 100.0 39 ............................. ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC 292484 29 100.0 38 ............................. CAAAGCAAGTACAGAAGCGTATTATGCTCTATTATAGT 292551 29 100.0 37 ............................. ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT 292617 29 100.0 38 ............................. TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA 292684 29 100.0 36 ............................. TTTAATAACTATGACAGTGAATTTAAAACGAAAGCT 292749 29 100.0 38 ............................. TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT 292816 29 100.0 38 ............................. AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA 292883 29 100.0 35 ............................. AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC 292947 29 100.0 36 ............................. ATTTAACAAATCAGCTAAATCAGCGCGACTCTGATA 293012 29 100.0 37 ............................. GTCGCTAGAGCTAAAAAATGGATAGAGGAACAACAAG 293078 29 100.0 36 ............................. TCAACTAATATTAATATCTCTTGTGGATTGGCCATT 293143 29 100.0 35 ............................. ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT 293207 29 100.0 37 ............................. TCTGTTGTAACTGTTGTGCCTTCCACAGCGTGCACTT 293273 29 100.0 35 ............................. ACATTTTGCACGCACCAAGCTTGACGGTCTGAAAC 293337 29 100.0 35 ............................. TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG 293401 29 100.0 34 ............................. ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT 293464 29 100.0 35 ............................. AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT 293528 29 100.0 36 ............................. GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT 293593 29 100.0 36 ............................. TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC 293658 29 100.0 36 ............................. AACAAAAATACGTTATTTGTTCGATGTAATGTAAAA 293723 29 100.0 38 ............................. TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAG 293790 29 100.0 36 ............................. TGTTAAATTTTATAGGAATGTCAACACCTTGAATTT 293855 29 100.0 36 ............................. CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC 293920 29 100.0 37 ............................. AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA 293986 29 100.0 35 ............................. AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGACGA 294050 29 100.0 37 ............................. ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT 294116 29 100.0 36 ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 294181 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACT 294247 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 294311 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 294376 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 294441 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 294507 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 294572 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 294636 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 294700 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 294765 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 294829 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 294893 29 100.0 37 ............................. CAAAACAGAGAAATCGTGTTCATTATCGGACATCTTA 294959 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 295023 29 93.1 0 .......................A....C | C [295046] ========== ====== ====== ====== ============================= ======================================= ================== 55 29 99.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //