Array 1 20122-20942 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMD01000073.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 670102-5 SEEH1025_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20122 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 20183 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 20244 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 20305 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 20366 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 20427 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 20488 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 20549 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 20610 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 20671 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 20732 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 20793 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 20854 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 20915 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1810-3473 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMMD01000087.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 670102-5 SEEH1025_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1810 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 1871 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 1932 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 1993 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 2060 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 2121 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 2182 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 2243 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 2304 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 2365 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 2426 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 2487 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 2548 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 2609 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2670 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 2731 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2792 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2853 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2914 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3017 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3078 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3139 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3200 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3261 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3322 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3383 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3444 29 96.6 0 A............................ | A [3470] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //