Array 1 95241-95406 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ADEF01000013.1 Prevotella timonensis CRIS 5C-B1 contig00028, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	====================================	=============================	==================
     95241	    36	 100.0	    29	....................................	TATGCAATGTTCAAAATAATCAGCTAATC	
     95306	    36	 100.0	    29	....................................	AGTATTATGGAAAAGTAGATGAAGAACAC	
     95371	    36	 100.0	     0	....................................	|                            	
==========	======	======	======	====================================	=============================	==================
         3	    36	 100.0	    30	GTTGTGGTTTGATGTAGAATCAAAATATGAAGCAAC	                             	       

# Left flank :   CCATGACAATGGCTTCTCTTGTGAAATATTATGCCAAAGAAGTAAAGAAAATCAGTTTACCTCTTTTAAAATGAGTGAGAACCGACTAAATGCTTATCATGTTATGTGGTTATTTGTAATGTTCGATTTACCCACTGTTACAAAGAAAGATAAGAAGGAGGCTGCACGTTTTCGCAAAGAATTAGAGAAAGACGGATTTACGATGTATCAATATAGCATCTATATTAGATATTGCGGTTCGCAGGAAAGCGCAAACGTTCATATCAAAAGGGTTAAATCAATCTTAACACCAAGTGGTAAAGTTAGTATTTTAACAGTTACAGACAAACAGTATTCAAAGATTATCAATATGTGGGGTGAAATTAAACAAAAAGCTCCAGAAACACCTATTCAGTTAGAATTTTTTTAGTATATTTGCAATAATGCTGATATATTCGAGCCACTTCTTGTATGAAAATATTTGTATAATATGCTTATATTCAATATTTTAAATAGTACAG
# Right flank :  ATTGGAGGTTAAACATGTCTGGATGGAATGTTGT

# Questionable array : NO	 Score: 2.67
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGGTTTGATGTAGAATCAAAATATGAAGCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-3.50,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [80.0-35.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.64,0   Confidence: HIGH] 

# Array family : NA
//


Array 1 160013-159713 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ADEF01000005.1 Prevotella timonensis CRIS 5C-B1 contig00090, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    160012	    36	  97.2	    30	.......................A............	CCACGTATAAGAACAATCGTCTTGAAGGAG 	
    159946	    36	 100.0	    29	....................................	ATAAATATTTTTATGAAAATAAATCACCT  	
    159881	    36	 100.0	    30	....................................	TGCCTGTCCAATCATTCGCCTGCCCCTTAT 	
    159815	    36	  97.2	    31	...........G........................	TCTCGGGCAACGCTTATAAAGTGCCAATGTA	
    159748	    36	  91.7	     0	....C.....A.....................A...	|                              	
==========	======	======	======	====================================	===============================	==================
         5	    36	  97.2	    30	GTTGTGGTTTGATGTAGAATCAAGATATGAAGCAAC	                               	       

# Left flank :   AAGCAAAACATTAATGAAATGAACGTT
# Right flank :  TCGTTTCAATTTCTCTTTTAACTTGTTTGGCTCTGGTATCTTGTCAGATATCAGGACTAACATCTGGTTATAATCATTTATCAAAACAACAAAAAGAAAAAATAATTGATTACAATGGTAAAATCGATAATATATCCGATTTTACTAATGTCTATAACGTTACTGTAGAACAAGTAAAAGAATATCTTTCAAATCATAACAACGTTATAATATATGATTATACACCATTTTGTAAGTCTTCTTTTTGTTTACCTCTAAACACATTAGAAGATATATGCAAGAAAAACAATACAGATTTACTTGTTATTTCAAACATTTATGATGACATTTTTTAAATATCACTAATAATTTTCCTATTTTAATGATAAAAACAAGTGTATATAATACTAAATCAAGGGCAAAATATATTGATAAATTTTATCAATCTTTAATTGGTTTAAATCAAAAAGAAATTGTTTATGCAAGCTACCATTATTTTCAGAATGGAACTTATATAAAAA

# Questionable array : NO	 Score: 2.84
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGGTTTGATGTAGAATCAAGATATGAAGCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-1.40,-3.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,0.78   Confidence: MEDIUM] 

# Array family : NA
//