Array 1 171162-169300 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBIR01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051000 CFSAN051000_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171161 29 100.0 32 ............................. TCCGACTCGCCAACCTGGTCTATGTGCTCTAT 171100 29 100.0 32 ............................. TCAACAACGGACTTACATAATTTTGCTTGTAT 171039 29 96.6 32 ............................T GCACCTTCCAGGATTGCAGAAATATAATTAAT 170978 29 100.0 32 ............................. CCCGTTTTGTGGCGGTGTGGCTGATCGTGTAA 170917 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 170856 29 100.0 32 ............................. GATCGCCCTCCGTTGAGCCATTATGTACAGCC 170795 29 100.0 32 ............................. GCCAGGTCCGTATGAGGACCGTATTTGAGCAG 170734 29 100.0 32 ............................. GTTCGATTCACATCAGGTCTGGGGGCTTACTA 170673 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 170612 29 100.0 32 ............................. ATGTGTGAGATACCGGCGCGGCCTGACATCAC 170551 29 100.0 32 ............................. CGGCGCCGTCCGGTAGTTCGTCGACAGAATCG 170490 29 100.0 32 ............................. TGACGTTATACATTTTCTCGCGAGCGATTTGC 170429 29 100.0 33 ............................. TTGAGCACGACGAAATTTTGGTTTGATGCAGCC 170367 29 100.0 32 ............................. GATACGGGCGCGCGGACGTTCTCCGCTGGCAG 170306 29 100.0 32 ............................. CCGCCAACTGTTTTGATAAATATCACCTGGCC 170245 29 100.0 32 ............................. CTCACGCCCATCTTTTTCCATTCATCCCACAA 170184 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 170123 29 96.6 32 ...........................T. TTGTCAGCGCTGACACTACTCGCTGCTTTCTG 170062 29 100.0 32 ............................. TCGAATCAGGTGGCGAACAGATCGAGTATCGT 170001 29 100.0 32 ............................. CCTGCTTTCTCTATCAAAGGGAAACTTCCTTT 169940 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 169879 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 169817 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 169756 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 169695 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 169634 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 169573 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 169512 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 169451 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 169390 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 169329 29 93.1 0 A...........T................ | A [169302] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGCAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTTAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 187760-187305 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBIR01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051000 CFSAN051000_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 187759 29 100.0 32 ............................. GGCGCCATTACCGGCGAATTAGCCGCCGGGGG 187698 29 96.6 32 .G........................... CAAGTGCCACACCGGCACCGCCTTAGCGCGGA 187637 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 187576 29 100.0 32 ............................. AGGTGTCCCGGTGGATGCTGGCCCGCAGGTTC 187515 29 100.0 32 ............................. TTACGGCGATATTCAGGCGGGTAGTCCAGCAT 187454 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 187393 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 187332 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //